stjude / ChIPseqSpikeInFreeLinks
A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications
☆32Updated 3 years ago
Alternatives and similar repositories for ChIPseqSpikeInFree
Users that are interested in ChIPseqSpikeInFree are comparing it to the libraries listed below
Sorting:
- ☆17Updated 6 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- snakemake workflow for post-processing scATACseq data☆21Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Statistically Significant loops from HiChIP data☆43Updated last year
- ☆30Updated 6 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 10 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆38Updated 2 years ago
- Pipeline for Cut&Tag analysis☆21Updated last month
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ☆17Updated 4 years ago
- ☆34Updated 5 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆18Updated last week
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- IDR☆31Updated 2 years ago
- Tutorial Website☆59Updated 4 years ago
- ☆19Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago