stjude / ChIPseqSpikeInFreeLinks
A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications
☆33Updated 3 years ago
Alternatives and similar repositories for ChIPseqSpikeInFree
Users that are interested in ChIPseqSpikeInFree are comparing it to the libraries listed below
Sorting:
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- Tutorial Website☆61Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- binned motif enrichment analysis and visualisation☆42Updated last month
- An R package to time somatic mutations☆64Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 7 months ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- ☆17Updated 6 years ago
- An R interface to the MEME Suite☆52Updated 4 months ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 6 years ago
- RNA editing tests☆17Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- ☆41Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆91Updated 7 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- GLASS consortium☆42Updated 5 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago