stjude / ChIPseqSpikeInFreeLinks
A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications
☆33Updated 3 years ago
Alternatives and similar repositories for ChIPseqSpikeInFree
Users that are interested in ChIPseqSpikeInFree are comparing it to the libraries listed below
Sorting:
- Tutorial Website☆59Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 6 months ago
- ☆17Updated 6 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- binned motif enrichment analysis and visualisation☆40Updated 2 weeks ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 4 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 11 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- ☆38Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Statistically Significant loops from HiChIP data☆43Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated 11 months ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆21Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆52Updated 4 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year