stjude / ChIPseqSpikeInFreeLinks
A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications
☆34Updated 3 years ago
Alternatives and similar repositories for ChIPseqSpikeInFree
Users that are interested in ChIPseqSpikeInFree are comparing it to the libraries listed below
Sorting:
- ATAC-seq processing pipeline☆34Updated 3 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- ☆17Updated 6 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Tutorial Website☆60Updated 4 years ago
- ☆41Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆93Updated last week
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆44Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 10 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- binned motif enrichment analysis and visualisation☆43Updated 2 weeks ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago