Allen Brain Atlas utilities, parsers and data structures
☆11Jun 25, 2017Updated 8 years ago
Alternatives and similar repositories for brainmap
Users that are interested in brainmap are comparing it to the libraries listed below
Sorting:
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆26May 12, 2020Updated 5 years ago
- Auto-annotations from Mouse brain development☆13Jul 11, 2020Updated 5 years ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated 6 months ago
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.☆14Sep 3, 2016Updated 9 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated last year
- An open-source ecosystem of hardware and software for head-fixed behavior☆13Sep 25, 2025Updated 5 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆40Mar 6, 2024Updated last year
- An r package that works as a wrapper to homologene☆49Nov 2, 2023Updated 2 years ago
- Analysis pipeline for the adolescent mouse nervous system project☆24Jun 28, 2018Updated 7 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- MERFISH decoding software☆26Aug 16, 2025Updated 6 months ago
- ☆31Jun 12, 2020Updated 5 years ago
- scRNA-seq data visualization from scrattch☆29Aug 20, 2025Updated 6 months ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆12Jan 4, 2026Updated last month
- Deep Learning Part 2, 2019 edition - transcriptions, screenshots and notebooks☆11Jul 19, 2019Updated 6 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Nov 18, 2024Updated last year
- Repository associated with Clus-DoC clustering and degree of colocalization analysis☆11Apr 25, 2022Updated 3 years ago
- Web content for Meren Lab☆11Updated this week
- This project implenments the OSPF using Dijkstra algorithm (Open Shortest Path First) network protocol in python. Link-State Routing pr…☆12Sep 1, 2017Updated 8 years ago
- ☆17Dec 4, 2025Updated 2 months ago
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆14Oct 22, 2025Updated 4 months ago
- Compact hyperdrive for up to 16 independently movable electrodes☆17Aug 25, 2019Updated 6 years ago
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated 6 months ago
- ☆12Jun 9, 2016Updated 9 years ago
- Fast radial symmetry transform implemented in pure python.☆13Apr 27, 2019Updated 6 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Mar 4, 2024Updated last year
- ☆13Feb 27, 2024Updated 2 years ago
- [source] CELLO - Cancer EvoLution toolbox for LOngitudinal data☆17Aug 24, 2020Updated 5 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Mar 20, 2023Updated 2 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Apr 24, 2021Updated 4 years ago
- Advanced Tool for Labeling And Segmentation☆40Oct 21, 2024Updated last year
- ☆13Jul 18, 2019Updated 6 years ago
- FinalVersions☆17Apr 3, 2017Updated 8 years ago
- Example datasets for DeepPoseKit☆10Nov 10, 2019Updated 6 years ago
- Microbiome Analysis Plotting and Visualization☆12Updated this week
- CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.☆13Oct 18, 2021Updated 4 years ago
- ☆11Jul 25, 2017Updated 8 years ago