sjczheng / EpiDISHLinks
This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representing a mixture of such cell-types. Inference proceeds via one of 3 methods (Robust Partial Correlations-RPC, Cibersort (CBS), Constrained Projection (CP)), as determined by user.
☆53Updated 3 months ago
Alternatives and similar repositories for EpiDISH
Users that are interested in EpiDISH are comparing it to the libraries listed below
Sorting:
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
- ☆47Updated 10 months ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- ☆41Updated 7 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- Identify and correct invalid gene symbols☆60Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- R package of colors for the Buenrostro Lab☆86Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Reference transcriptome indices build from kallisto for popular organisms☆44Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- ☆59Updated last year
- An R package to time somatic mutations☆64Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 8 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- ☆30Updated 7 years ago
- ☆50Updated this week
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago