sjczheng / EpiDISH
This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representing a mixture of such cell-types. Inference proceeds via one of 3 methods (Robust Partial Correlations-RPC, Cibersort (CBS), Constrained Projection (CP)), as determined by user.
☆50Updated 5 months ago
Alternatives and similar repositories for EpiDISH:
Users that are interested in EpiDISH are comparing it to the libraries listed below
- Toolbox with R scripts☆38Updated 6 years ago
- Identify and correct invalid gene symbols☆58Updated 5 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Toolkit for Single-Cell Velocity☆55Updated 3 months ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 10 months ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆28Updated 4 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- ☆41Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- An r package that works as a wrapper to homologene☆45Updated last year
- ☆40Updated 7 years ago
- ☆28Updated 6 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆31Updated 3 weeks ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Explore and share your scRNAseq clustering results☆50Updated last year