Alternatives and similar repositories for TNBC_analysis

Users that are interested in TNBC_analysis are comparing it to the libraries listed below

• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 4 years ago
• miccec / yaGST
  ☆13Updated 7 years ago
• DongqiangZeng0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆29Updated 2 years ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• SCA-IRCM / SingleCellSignalR
  R package for Bioconductor submission
  ☆34Updated 2 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆26Updated 3 years ago
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆22Updated 2 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆29Updated 6 years ago
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• Famingzhao / NEPAL
  Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer
  ☆14Updated 6 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last week
• ventolab / Human-Endometrial-Cell-Atlas_HECA
  Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.
  ☆24Updated 11 months ago
• madsen-lab / valiDrops
  ☆16Updated 2 months ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• soumelis-lab / ICELLNET
  ☆20Updated last year
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 2 years ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆18Updated 4 years ago
• andygxzeng / AMLHierarchies
  Analysis notebooks and data for AML hierarchies paper
  ☆16Updated last year
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 7 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆55Updated last year
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 11 months ago
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆36Updated last month
• yunshun / HumanBreast10X
  ☆26Updated 3 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• kenichi-shimada / depmap-analysis
  This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…
  ☆13Updated 3 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆27Updated last year
• compbioNJU / CellFunTopic
  Functional Annotation for Single-Cell Transcriptomics
  ☆10Updated 11 months ago
• marrlab / CAR_T_TargetIdentification
  Computational identification of targets for CAR-T cell therapy in AML
  ☆16Updated 2 years ago
• ImXman / MACA
  MACA: Marker-based automatic cell-type annotation for single cell expression data
  ☆25Updated last year