TransBioInfoLab / TNBC_analysis
Code to reproduce TNBC analysis and figures
☆23Updated 2 years ago
Alternatives and similar repositories for TNBC_analysis:
Users that are interested in TNBC_analysis are comparing it to the libraries listed below
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆40Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆17Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆20Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- ☆16Updated 2 years ago
- ☆13Updated 7 years ago
- R package for Flexible dot plots☆29Updated 2 years ago
- Functional Annotation for Single-Cell Transcriptomics☆10Updated 9 months ago
- ☆17Updated 4 years ago
- Identification and Validation Robust Prognostic Biomarkers and Signatures in Solid Tumors☆18Updated this week
- BulkSignalR☆18Updated 2 weeks ago
- ☆22Updated 4 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆35Updated last week
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Updated 3 years ago
- Analysis notebooks and data for AML hierarchies paper☆16Updated last year
- Calculating Tumor microenvironment score☆28Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆24Updated 3 years ago
- ☆21Updated 3 years ago
- ☆16Updated last year
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆13Updated 4 months ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 3 years ago
- Code used to process the data of the HBCA project☆25Updated last year
- Standalone shiny server container for viewing CellChat object☆12Updated 4 years ago
- R package for Bioconductor submission☆33Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated last month
- ☆25Updated 3 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago