TransBioInfoLab / TNBC_analysisLinks
Code to reproduce TNBC analysis and figures
☆24Updated 3 years ago
Alternatives and similar repositories for TNBC_analysis
Users that are interested in TNBC_analysis are comparing it to the libraries listed below
Sorting:
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 3 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 2 months ago
- ☆57Updated last year
- R package for Bioconductor submission☆35Updated 2 years ago
- Calculating Tumor microenvironment score☆29Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 4 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 9 months ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆20Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Scripts from the GBM cellular states paper☆19Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 2 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆33Updated 2 months ago
- An R package for visualising cell-cell interactions☆44Updated 11 months ago
- ☆47Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last week
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆30Updated 5 years ago
- ☆19Updated 3 months ago
- Functional Annotation for Single-Cell Transcriptomics☆10Updated last year
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- ☆24Updated 2 months ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆31Updated 2 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago