xuyungang / scIGANs
Generative adversarial networks for single-cell RNA-seq imputation
☆36Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for scIGANs
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆27Updated 4 years ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆29Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆48Updated 2 years ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 2 years ago
- cTPnet Package☆23Updated 2 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆28Updated 4 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆73Updated 11 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆31Updated last year
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆19Updated this week
- ☆48Updated 7 months ago
- ☆45Updated 2 months ago
- scLearn：Learning for single cell assignment☆34Updated last year
- ☆28Updated 2 months ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆34Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆38Updated 3 years ago
- ☆44Updated last year
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆11Updated 3 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆55Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- ☆10Updated last year
- Reproducing result from the paper☆33Updated 3 years ago
- Spatial direct messaging detected by bivariate Moran☆24Updated last week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 4 years ago
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆52Updated 2 years ago
- domain adaptation of spatial and single-cell transcriptome☆24Updated 2 months ago
- Spatial Cellular Estimator for Tumors☆42Updated this week
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- covolutional neural network based coexpression analysis☆74Updated 4 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago