kordastilab / ImmunoCluster
☆27Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for ImmunoCluster
- scDataviz: single cell dataviz and downstream analyses☆61Updated 3 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- Toolkit for Single-Cell Velocity☆55Updated last month
- Cell type pipes for R☆51Updated 9 months ago
- ☆53Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆53Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆24Updated last year
- Normalize CITEseq Data☆63Updated 5 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆89Updated this week
- An r package that works as a wrapper to homologene☆42Updated last year
- Identify and correct invalid gene symbols☆55Updated last week
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆40Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- scRNA-seq cell type identification☆41Updated 5 years ago
- R package containing the Cerebro application.☆40Updated 3 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆36Updated 3 weeks ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆34Updated 8 months ago
- ☆12Updated 6 years ago
- Various utility functions for Seurat single-cell analysis☆37Updated this week
- ☆37Updated 3 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 5 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆31Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory …☆12Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- "Principles of Spatial Transcriptomics Analysis with Bioconductor" book☆41Updated 3 weeks ago
- R package to visualize scRNA sequencing data.☆20Updated 2 years ago
- Toolbox with R scripts☆38Updated 6 years ago