Alternatives and similar repositories for xg-old

Users that are interested in xg-old are comparing it to the libraries listed below

• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 3 years ago
• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 9 years ago
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆51Updated last year
• lh3 / sdg
  EXPERIMENTAL implementation of side graph
  ☆10Updated 10 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 4 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆33Updated last year
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 2 months ago
• vcflib / tabixpp
  C++ wrapper to tabix indexer
  ☆17Updated last week
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• jteutenberg / downpore
  Suite of tools for use in genome assembly and consensus. Work in progress.
  ☆31Updated 4 years ago
• mklarqvist / tachyon
  High-level API for storing and querying sequence variant data
  ☆20Updated 5 years ago
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆30Updated 2 years ago
• jmschrei / PyPore
  Tools used to analyze data from nanopore-based experiments.
  ☆30Updated 10 years ago
• viq854 / bwbble
  Read alignment with a multi-genome reference
  ☆22Updated 5 years ago
• nanoporetech / minimappy
  Python bindings to minimap2
  ☆16Updated 7 years ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 4 years ago
• VGP / vgp-tools
  ☆28Updated last month
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 9 years ago
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆54Updated 5 years ago
• wurmlab / genevalidatorapp
  A web wrapper for GeneValidator
  ☆11Updated 4 years ago
• bioinformatics-centre / bayesembler
  A Bayesian method for doing transcriptome assembly from RNA-seq data
  ☆25Updated 10 years ago
• ocxtal / comb
  comb aligner -- a graphical nucleotide sequence alignment tool
  ☆9Updated 8 years ago
• jasperlinthorst / reveal
  Graph based multi genome aligner
  ☆47Updated 3 years ago
• DecodeGenetics / BamHash
  ☆37Updated 4 years ago
• wtsi-svi / ReadServer
  Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)
  ☆14Updated 7 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last month
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆25Updated last year
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆42Updated last year