nygenome / taxmapsLinks
Ultra-efficient taxonomic mapping of NGS data
☆51Updated 4 years ago
Alternatives and similar repositories for taxmaps
Users that are interested in taxmaps are comparing it to the libraries listed below
Sorting:
- A versatile toolkit for k-mers with taxonomic information☆78Updated 10 months ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Structural variant caller☆54Updated 3 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated last year
- full taxonomer cython repository☆22Updated 5 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Evolutionary Transcriptomics with R☆43Updated last week
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆24Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Population-wide Deletion Calling☆35Updated last month
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago