lfaino / LoReAnLinks
Long Reads Annotation pipeline
☆72Updated 3 years ago
Alternatives and similar repositories for LoReAn
Users that are interested in LoReAn are comparing it to the libraries listed below
Sorting:
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 10 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- ☆45Updated 8 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆32Updated last year
- Simple pileup-based variant caller☆93Updated 6 months ago
- A (very) simple script to QC Hi-C data.☆26Updated 11 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Genome Scripts used in fungal comparative genomics☆66Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 6 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- ☆30Updated 4 years ago
- ☆83Updated 8 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆33Updated 2 weeks ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆104Updated 9 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- ☆78Updated 5 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆35Updated 7 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated this week