Alternatives and similar repositories for LoReAn:

Users that are interested in LoReAn are comparing it to the libraries listed below

• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 2 years ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 3 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• xiaochuanle / MECAT2
  ☆70Updated 4 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆54Updated 2 years ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆76Updated 10 months ago
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆43Updated 2 months ago
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆41Updated last month
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆87Updated last month
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆97Updated last year
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• yjx1217 / LRSDAY
  LRSDAY: Long-read Sequencing Data Analysis for Yeasts
  ☆31Updated last year
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆50Updated 5 years ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆64Updated last year
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆30Updated last week
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆79Updated 3 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆92Updated last month
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆107Updated 3 weeks ago
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆49Updated 4 years ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆43Updated 11 months ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆79Updated last year
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆66Updated last month
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆89Updated 3 weeks ago
• daewoooo / SVbyEye
  ☆77Updated last month
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆69Updated 3 weeks ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆47Updated last year
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆53Updated last week