lfaino / LoReAn
Long Reads Annotation pipeline
☆72Updated 3 years ago
Alternatives and similar repositories for LoReAn:
Users that are interested in LoReAn are comparing it to the libraries listed below
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Same species annotation lift over pipeline.☆97Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 2 months ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- ☆43Updated 8 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- NLR-Annotator upload☆65Updated last year
- ☆71Updated 4 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Dfam Transposable Element Tools Docker container.☆90Updated last month
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 3 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated last week
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- Genome Annotation Without Nightmares☆44Updated 3 months ago
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Updated 6 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆98Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- Mapping pipeline for data generated using Arima-HiC☆76Updated 11 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆50Updated 5 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆74Updated 11 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆114Updated last week
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- PHAST☆73Updated this week
- ☆61Updated last month
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆109Updated last week