BilkentCompGen / herculesLinks
Profile HMM-based hybrid error correction algorithm for long reads
☆21Updated 7 years ago
Alternatives and similar repositories for hercules
Users that are interested in hercules are comparing it to the libraries listed below
Sorting:
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- ☆35Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆33Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 4 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆30Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Updated 11 months ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆43Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- ☆51Updated last year
- Graph based multi genome aligner☆49Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- ☆21Updated 6 years ago