conchoecia / pauvre
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
☆52Updated 3 months ago
Alternatives and similar repositories for pauvre:
Users that are interested in pauvre are comparing it to the libraries listed below
- Tools for the analysis of structural variation in genomes☆78Updated 10 months ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 5 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Toolkit for calling structural variants using short or long reads☆100Updated 2 weeks ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated last month
- ☆46Updated 3 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Error correction of ONT transcript reads☆59Updated last year
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 4 months ago
- Genome Annotation Without Nightmares☆43Updated 3 weeks ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated last month
- A set of workflows written in Nextflow for Genome Annotation.☆44Updated 7 months ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆85Updated 2 months ago
- ☆27Updated this week
- ✏️ Genome assembly polishing & SNV detection☆65Updated this week
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 5 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- PGR-TK: Pangenome Research Tool Kit☆97Updated 9 months ago
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- WDL workflows for variant calling and assembly using ONT☆32Updated 2 weeks ago
- Segmental Duplication Assembler (SDA).☆44Updated last year