conchoecia / pauvreView external linksLinks
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
☆54Nov 9, 2024Updated last year
Alternatives and similar repositories for pauvre
Users that are interested in pauvre are comparing it to the libraries listed below
Sorting:
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆307Mar 18, 2024Updated last year
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 3 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Nov 25, 2017Updated 8 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Apr 9, 2021Updated 4 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Segmental Duplication Assembler (SDA).☆43May 7, 2023Updated 2 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆33Jun 17, 2024Updated last year
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated last year
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- SV caller for nanopore data☆92Jun 7, 2020Updated 5 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Apr 23, 2016Updated 9 years ago
- Structural Variant Identification Method using Long Reads☆181Jun 29, 2021Updated 4 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 3 weeks ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆51Aug 9, 2021Updated 4 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago
- Materials for Spring 2021 Applied Genomics Course☆54Apr 21, 2021Updated 4 years ago
- ☆12Oct 13, 2021Updated 4 years ago
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago
- Tandem repeat genotyping from long reads☆20Feb 5, 2026Updated last week
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Jan 15, 2018Updated 8 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Aug 17, 2025Updated 5 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 5 months ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆20Feb 2, 2021Updated 5 years ago
- Create statistic summary of an Oxford Nanopore read dataset☆131Nov 4, 2022Updated 3 years ago
- cgat-apps repository☆34Apr 9, 2025Updated 10 months ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Feb 23, 2020Updated 5 years ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Sep 10, 2018Updated 7 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 2 years ago
- vembrane filters VCF records using python expressions☆68Jan 8, 2026Updated last month
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Mar 26, 2021Updated 4 years ago