conchoecia / pauvre
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
☆54Updated 5 months ago
Alternatives and similar repositories for pauvre:
Users that are interested in pauvre are comparing it to the libraries listed below
- PacBio hybrid error correction through iterative short read consensus☆61Updated 5 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 10 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Genome Annotation Without Nightmares☆44Updated 3 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 7 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- A tool for Racon polishing of miniasm assemblies☆74Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆72Updated 4 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago
- Synteny Imager☆61Updated 8 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 4 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆48Updated last week
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- ✏️ Genome assembly polishing & SNV detection☆68Updated 2 months ago
- WDL workflows for variant calling and assembly using ONT☆33Updated this week
- Toolkit for calling structural variants using short or long reads☆103Updated 2 weeks ago
- ☆79Updated 2 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- ☆43Updated 8 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago