Alternatives and similar repositories for prohlatype

Users that are interested in prohlatype are comparing it to the libraries listed below

• hammerlab / epidisco
  Personalized cancer epitope discovery and peptide vaccine prediction pipeline
  ☆30Updated 7 years ago
• AlexanderDilthey / MHC-PRG
  Population Reference Graphs for the HLA and MHC.
  ☆35Updated 6 years ago
• matsen / pplacer
  Phylogenetic placement and downstream analysis
  ☆87Updated last month
• cancerit / cgpPindel
  Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel
  ☆28Updated 4 months ago
• BoutrosLaboratory / bamql
  Query language for filtering SAM/BAM reads
  ☆31Updated 11 months ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• refresh-bio / VCFShark
  ☆18Updated 3 years ago
• ericminikel / minimal_representation
  Convert genetic variants to minimal representation
  ☆23Updated 7 years ago
• ncbi / cwl-ngs-workflows-cbb
  A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
  ☆23Updated 2 months ago
• BD2KGenomics / protect
  ☆29Updated 4 years ago
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆22Updated 4 years ago
• bcbio / bcbio_validation_workflows
  A community menagarie of automated variant validations using bcbio and the Common Workflow Language
  ☆21Updated 3 years ago
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆29Updated 6 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆48Updated 5 years ago
• ncbi / BAMscale
  BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …
  ☆72Updated 10 months ago
• algo-cancer / ImmunoTyper2
  Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data
  ☆11Updated 5 months ago
• bcbio / bcbio.variation.recall
  Parallel merging, squaring off and ensemble calling for genomic variants
  ☆20Updated 6 years ago
• openvax / varlens
  commandline manipulation of genomic variants and NGS reads
  ☆19Updated last year
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆31Updated 9 years ago
• OpenGene / FusionDirect.jl
  (No maintenance) Detect gene fusion directly from raw fastq files
  ☆25Updated 8 years ago
• ewels / nf-core-rnaseq
  See the main fork of this repository here >>>
  ☆38Updated 5 months ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆51Updated 6 years ago
• OpenGene / SeqMaker.jl
  (No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated
  ☆24Updated 8 years ago
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆70Updated 4 months ago
• guigolab / grape-nf
  An automated RNA-seq pipeline using Nextflow
  ☆37Updated last year
• incertae-sedis / smof
  Explore and analyze biological sequence data
  ☆16Updated last year
• nmdp-bioinformatics / flow
  Consensus assembly and variant calling workflow.
  ☆12Updated 10 years ago
• funpopgen / CaVEMaN
  Causal Variant Evidence Mapping with Non-parametric resampling
  ☆12Updated 4 years ago
• flo-compbio / genometools
  GenomeTools: Scripts and Classes for Working with Genomic Data
  ☆12Updated 7 years ago
• churchill-lab / emase
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆21Updated 2 years ago