hammerlab / prohlatypeLinks
Probabilistic HLA typing
☆35Updated 6 years ago
Alternatives and similar repositories for prohlatype
Users that are interested in prohlatype are comparing it to the libraries listed below
Sorting:
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Updated 7 years ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 6 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 3 months ago
- Infrastructure code to support DNA pipeline☆38Updated 10 years ago
- Phylogenetic placement and downstream analysis☆86Updated this week
- CRISPR/Cas9 guide RNA Design☆24Updated last year
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 2 years ago
- commandline manipulation of genomic variants and NGS reads☆19Updated 11 months ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Clonal reconstruction from HTS data☆10Updated 3 years ago
- Query language for filtering SAM/BAM reads☆31Updated 10 months ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 3 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Benchmarking toolkit for variant calling☆48Updated 4 years ago
- Explore and analyze biological sequence data☆16Updated last year
- Convert genetic variants to minimal representation☆23Updated 7 years ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆19Updated 3 months ago
- See the main fork of this repository here >>>☆38Updated 3 months ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- a string to graph aligner☆41Updated 9 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Updated 3 years ago
- Bioinformatics Open Source Sequence machine☆33Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- (No maintenance) Detect gene fusion directly from raw fastq files☆25Updated 8 years ago