hammerlab / prohlatype
Probabilistic HLA typing
☆35Updated 5 years ago
Alternatives and similar repositories for prohlatype
Users that are interested in prohlatype are comparing it to the libraries listed below
Sorting:
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Updated 7 years ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 6 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- Bioinformatics Ketrew Pipelines☆27Updated 3 years ago
- commandline manipulation of genomic variants and NGS reads☆19Updated 8 months ago
- The OpEx (Optimised Exome) pipeline☆9Updated 6 years ago
- Query language for filtering SAM/BAM reads☆31Updated 6 months ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Updated 6 years ago
- Convert genetic variants to minimal representation☆23Updated 7 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆16Updated this week
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- Gene lists related to cancer immunotherapy☆13Updated 8 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- ☆22Updated last year
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated this week
- ☆29Updated 3 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 2 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Workflows I find helpful for fungal genome annotation☆21Updated last year