hammerlab / prohlatypeLinks
Probabilistic HLA typing
☆35Updated 6 years ago
Alternatives and similar repositories for prohlatype
Users that are interested in prohlatype are comparing it to the libraries listed below
Sorting:
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Updated 7 years ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 6 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22Updated 4 years ago
- Phylogenetic placement and downstream analysis☆87Updated 2 months ago
- Query language for filtering SAM/BAM reads☆31Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 6 years ago
- Clonal reconstruction from HTS data☆10Updated 4 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 5 months ago
- ☆18Updated 3 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆23Updated 2 months ago
- pythonic wrapper for htslib☆24Updated 8 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆14Updated 9 years ago
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆11Updated 5 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 3 years ago
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Updated 4 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 5 months ago
- Comprehensive Human Expressed SequenceS☆18Updated 3 months ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13Updated 6 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated last year
- A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis☆24Updated 2 months ago
- reference free variant assembly☆34Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Tools for handling HiC and 5C data☆24Updated last year
- Readability enhancement tool for bioinformatics data file format☆29Updated 5 years ago
- 🍶 Genome assembly with short sequence reads☆26Updated last year