Alternatives and similar repositories for readucks

Users that are interested in readucks are comparing it to the libraries listed below

• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 6 years ago
• shenwei356 / ncbi_acc2gtdb_acc
  Mapping NCBI Genbank accession to GTDB accession
  ☆14Updated 4 years ago
• JMencius / LongBow
  Basecalling configuration prediction through FASTQ files
  ☆19Updated 2 weeks ago
• salzberg-lab / bolotie
  SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
  ☆13Updated last year
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 3 years ago
• maxibor / sam2lca
  Lowest Common Ancestor from a SAM/BAM/CRAM alignment file
  ☆9Updated 9 months ago
• iqbal-lab-org / simutator
  Simulate mutations in genomes
  ☆15Updated 4 years ago
• emilhaegglund / schavott
  Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing
  ☆9Updated 7 years ago
• jfass / apc
  (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
  ☆11Updated 4 years ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 3 weeks ago
• imgag / plasmIDent
  ☆15Updated 11 months ago
• FredHutch / octapus
  Bacterial Operon Finder for Functional Organization
  ☆15Updated last year
• mbhall88 / streamformatics
  Real-time species-typing visualisation for nanopore data.
  ☆13Updated 2 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆21Updated 8 months ago
• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated last year
• pmenzel / taxonomy-tools
  C++ tools for NCBI taxonomy tasks
  ☆11Updated 3 years ago
• bede / seqsum
  Robust individual and aggregate checksums for nucleotide sequences
  ☆16Updated last year
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆27Updated 3 weeks ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 3 weeks ago
• pg-space / panspace
  Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes
  ☆10Updated last month
• rrwick / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆8Updated 7 years ago
• SwingOlive / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated last year
• xmuyulab / Snipe
  Highly sensitive pathogen detection
  ☆12Updated 4 years ago
• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆16Updated 2 years ago
• leoisl / bacterial_assembly_pipeline
  ☆11Updated last year
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year
• AfZheng126 / MORA
  MetagenOmic read Re-Assigner and abundance quantifier
  ☆19Updated 4 months ago
• AllTheBacteria / Phylign
  Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…
  ☆12Updated last year
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated 11 months ago