Alternatives and similar repositories for GERMS_16S_pipeline

Users that are interested in GERMS_16S_pipeline are comparing it to the libraries listed below

• mdcao / npAnalysis
  Software for Nanopore Analysis
  ☆10Updated 7 years ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆23Updated 3 years ago
• alexiswl / poreduck
  A comprehensive toolkit for running Oxford Nanopore's MinION
  ☆12Updated 6 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated last year
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• sinamajidian / phaseme
  A tool set to assess the quality of the per read phasing and reduce the errors.
  ☆12Updated 5 years ago
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 7 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated 11 months ago
• genomic-medicine-sweden / jasen
  Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
  ☆11Updated last week
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated 3 weeks ago
• leoisl / bacterial_assembly_pipeline
  ☆11Updated last year
• SwingOlive / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated 2 years ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• DaehwanKimLab / seqwho
  SeqWho - A reliable and rapid FASTQ(A) file classifier
  ☆11Updated 3 years ago
• Parsoa / Nebula
  Ultra-efficient mapping-free structural variation genotyper
  ☆19Updated 4 years ago
• bio-ontology-research-group / DeepSVP
  Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
  ☆16Updated 3 years ago
• lh3 / unicall
  A wrapper for calling small variants from human germline high-coverage single-sample Illumina data
  ☆14Updated 6 years ago
• KiddLab / QuicK-mer2
  ☆11Updated 2 years ago
• fritzsedlazeck / SURVIVOR_ant
  A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
  ☆13Updated 7 years ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 11 months ago
• kantorlab / hivmmer
  Alignment and variant-calling pipeline for Illumina HIV sequences.
  ☆11Updated 5 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 7 years ago
• BCM-Lupskilab / HMZDelFinder
  CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data
  ☆12Updated 7 years ago
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 7 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 10 months ago
• UofABioinformaticsHub / shinyNgsreports
  The shiny app that accompanies the ngsReports R package
  ☆14Updated 4 years ago
• DessimozLab / pyham
  ☆11Updated 3 weeks ago