CSB5 / GERMS_16S_pipeline
Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences
☆14Updated 8 years ago
Related projects: ⓘ
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 5 years ago
- Read nanopore sequence reads in real-time☆13Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 3 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- full taxonomer cython repository☆22Updated 4 years ago
- Software for Nanopore Analysis☆10Updated 6 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆17Updated 3 years ago
- ☆11Updated last year
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 4 years ago
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Updated 5 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 2 years ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆22Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Genomic Assemblies Merger for NGS☆26Updated 10 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆20Updated 3 weeks ago
- ☆12Updated 3 years ago
- PopSTR - A Population based microsatellite genotyper☆31Updated 10 months ago
- Identifying repeats in high-throughput sequencing data☆15Updated 5 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 3 years ago
- Adapters for trimming☆30Updated 5 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago