CSB5 / GERMS_16S_pipelineLinks
Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences
☆14Updated 9 years ago
Alternatives and similar repositories for GERMS_16S_pipeline
Users that are interested in GERMS_16S_pipeline are comparing it to the libraries listed below
Sorting:
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 weeks ago
- Software for Nanopore Analysis☆10Updated 7 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- ☆11Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Toolkit for calling and analyzing de novo STR mutations☆17Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- Nanopore Real-Time Analysis Tool☆15Updated last year
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆21Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- ☆11Updated last week
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- Mutation rate analysis of autosomal loci☆15Updated 5 years ago
- TreeBeST: Tree Building guided by Species Tree☆14Updated 14 years ago
- ☆12Updated 2 months ago
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Updated 2 weeks ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆34Updated 3 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Updated 3 years ago
- ☆11Updated last year
- ☆10Updated 5 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11Updated 5 years ago