CSB5 / GERMS_16S_pipeline
Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences
☆14Updated 8 years ago
Alternatives and similar repositories for GERMS_16S_pipeline:
Users that are interested in GERMS_16S_pipeline are comparing it to the libraries listed below
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Updated 5 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Software for Nanopore Analysis☆10Updated 7 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆13Updated 4 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- transposable element typing pipeline☆17Updated last year
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 4 years ago
- ☆12Updated 3 weeks ago
- Highly sensitive pathogen detection☆12Updated 4 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- Simple script to generate whole-genome coverage plots☆18Updated 9 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- genomic alignment similarity search tool☆18Updated 9 months ago
- The shiny app that accompanies the ngsReports R package☆14Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 9 months ago
- Tool for visualising assemblies.☆17Updated 9 years ago
- ☆15Updated 7 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated 6 months ago
- ☆11Updated last year
- TreeBeST: Tree Building guided by Species Tree☆14Updated 14 years ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆10Updated this week
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 6 months ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- an easy to use implementation of the NCBI taxonomy database for daily use☆9Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago