garviz / MUMmerLinks
MUMmer for HPC
☆14Updated 12 years ago
Alternatives and similar repositories for MUMmer
Users that are interested in MUMmer are comparing it to the libraries listed below
Sorting:
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Pipeline for calling poly(A) tail lengths from nanopore direct RNA data using nanopolish☆10Updated 5 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 2 weeks ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- Software for Nanopore Analysis☆10Updated 7 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- ☆14Updated 2 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- ☆20Updated last year
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- Immuological gene typing and annotation for genome assembly☆38Updated 7 months ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 7 years ago
- variation discovery using long range information in linked-reads☆15Updated 4 years ago
- ☆14Updated 2 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Updated 8 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year