Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.
☆32Jul 2, 2020Updated 6 years ago
Alternatives and similar repositories for NanoSatellite
Users that are interested in NanoSatellite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆52Jun 25, 2024Updated 2 years ago
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 9 months ago
- Structural Variants Pipeline for Long Reads☆45Jul 17, 2018Updated 8 years ago
- Detect novel (and reference) STR expansions from short-read data☆72Dec 6, 2025Updated 10 months ago
- SV caller for nanopore data☆92Jun 7, 2020Updated 6 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 6 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 4 years ago
- comparative genome dot plot viewer☆10May 19, 2019Updated 7 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆39Feb 19, 2021Updated 5 years ago
- Noise-Cancelling Repeat Finder☆27Apr 2, 2026Updated 7 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆14Jul 1, 2026Updated 4 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆113Oct 25, 2021Updated 5 years ago
- ☆25Jul 29, 2025Updated last year
- ☆85Mar 3, 2025Updated last year
- Tandem repeat genotyping with long reads☆41Sep 23, 2025Updated last year
- A python library for decomposing and visualizing tandem repeat sequences☆11May 26, 2026Updated 5 months ago
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆17Jan 4, 2025Updated last year
- ☆14Sep 11, 2023Updated 3 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Graph based multi genome aligner☆49Sep 17, 2021Updated 5 years ago
- ☆38Apr 13, 2024Updated 2 years ago
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Feb 24, 2020Updated 6 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 4 years ago
- Structural Variant Identification Method using Long Reads☆189Jun 29, 2021Updated 5 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆42Oct 28, 2026Updated last week
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated last year
- ☆12Oct 13, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Plotting tools for nanopore methylation data☆96Updated this week
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Dec 22, 2020Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Oct 14, 2026Updated 3 weeks ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆49Dec 6, 2024Updated last year
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆37Mar 4, 2026Updated 8 months ago
- ☆134Updated this week
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 3 years ago