Fast fusion detection using kallisto
☆79Jun 11, 2025Updated 9 months ago
Alternatives and similar repositories for pizzly
Users that are interested in pizzly are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆225Sep 18, 2025Updated 6 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- RNA Fusion Detection and Quantification☆18Oct 31, 2018Updated 7 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆399Aug 30, 2025Updated 6 months ago
- STAR-Fusion codebase☆249Oct 4, 2025Updated 5 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆262Sep 21, 2025Updated 6 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 6 years ago
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 7 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Tools for early stage alignment file processing☆95Mar 12, 2019Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆32Sep 23, 2020Updated 5 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 4 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Transcript quantification import for modular pipelines☆142Sep 30, 2025Updated 5 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆149Sep 9, 2025Updated 6 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Dec 14, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- nim wrapper for htslib for parsing genomics data files☆158Dec 15, 2025Updated 3 months ago
- sort genomic data☆36Nov 7, 2025Updated 4 months ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Apr 7, 2022Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆30Jan 30, 2019Updated 7 years ago
- Near-optimal RNA-Seq quantification☆753Mar 16, 2026Updated last week
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Tools for working with BUS files☆102May 27, 2025Updated 9 months ago
- ☆12Feb 19, 2017Updated 9 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 5 years ago