Alternatives and similar repositories for npAnalysis:

Users that are interested in npAnalysis are comparing it to the libraries listed below

• mdcao / npReader
  Read nanopore sequence reads in real-time
  ☆14Updated 8 years ago
• alexiswl / poreduck
  A comprehensive toolkit for running Oxford Nanopore's MinION
  ☆12Updated 6 years ago
• CSB5 / INC-Seq
  INC-Seq: Accurate single molecule reads using nanopore sequencing
  ☆13Updated 4 years ago
• kuleshov / architect
  Scaffolding genomes using synthetic long read clouds
  ☆20Updated 8 years ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆17Updated last year
• SilvioWeging / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated last year
• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated last year
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆19Updated 4 years ago
• CSB5 / GERMS_16S_pipeline
  Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences
  ☆14Updated 8 years ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆55Updated last year
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 5 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated 8 months ago
• benoukraflab / NanoVar---archived
  Archived version 1.0.2
  ☆16Updated 5 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 7 years ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• jhhung / PEAT
  An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
  ☆22Updated 4 years ago
• tseemann / ekidna
  Assembly based core genome SNP alignments for bacteria
  ☆25Updated 5 years ago
• wen-biao / OM-HiC-scaffolding
  Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data
  ☆20Updated 4 years ago
• laurentnoe / yass
  genomic alignment similarity search tool
  ☆18Updated 9 months ago
• institut-de-genomique / NaS
  NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…
  ☆15Updated 7 years ago
• sejmodha / MiscScripts
  ☆12Updated last week
• mjsull / Contiguity
  Tool for visualising assemblies.
  ☆17Updated 9 years ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆22Updated 3 years ago
• Gardner-BinfLab / deltaBS
  Quantifying the significance of genetic variation using probabilistic profile-based methods.
  ☆19Updated 3 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated 2 months ago
• nickloman / poredb
  ☆19Updated 8 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆47Updated 5 years ago
• paudano / kestrel
  Mapping-free variant caller for short-read Illumina data
  ☆19Updated 4 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆24Updated 11 months ago
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 5 years ago