mdcao / npAnalysisLinks
Software for Nanopore Analysis
☆10Updated 7 years ago
Alternatives and similar repositories for npAnalysis
Users that are interested in npAnalysis are comparing it to the libraries listed below
Sorting:
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 7 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated last month
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Updated 10 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated last month
- Archived version 1.0.2☆16Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- ☆18Updated 8 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Updated 8 years ago
- genomic alignment similarity search tool☆18Updated 5 months ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- ☆12Updated 7 months ago
- Tools for finding mobile element insertions from single-end datasets☆24Updated 5 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 10 months ago
- Northern Arizona SNP Pipeline☆20Updated 11 months ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago