mdcao / npAnalysisLinks
Software for Nanopore Analysis
☆10Updated 7 years ago
Alternatives and similar repositories for npAnalysis
Users that are interested in npAnalysis are comparing it to the libraries listed below
Sorting:
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- ☆18Updated 8 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last week
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- ☆12Updated 6 months ago
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Updated 2 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆15Updated 5 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Updated 8 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 9 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated this week
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- Formats Roary output for viewing in FriPan☆11Updated 7 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Updated 9 years ago
- ☆21Updated 5 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Updated 10 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 7 years ago