mitenjain / nanopore
UCSC Nanopore group's software pipeline for reference-based sequence analysis
☆53Updated 9 years ago
Alternatives and similar repositories for nanopore:
Users that are interested in nanopore are comparing it to the libraries listed below
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- ☆76Updated 4 years ago
- PHAST☆72Updated 2 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆70Updated 3 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆94Updated last month
- ☆35Updated 3 weeks ago
- ONT assembly and Illumina polishing pipeline☆91Updated 4 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 3 years ago
- Python programs for processing GFF3 files☆96Updated 10 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated last week
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆142Updated 8 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Same species annotation lift over pipeline.☆96Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated 2 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 6 years ago
- UCSC Nanopore☆43Updated 5 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆103Updated 2 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- accurate LiftOver tool for new genome assemblies☆119Updated 6 months ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 3 months ago
- Assembly statistic visualisation☆89Updated last year
- Long-read mock community experiments☆104Updated 3 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆115Updated 4 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆54Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 5 years ago