variation discovery using long range information in linked-reads
☆15Oct 5, 2021Updated 4 years ago
Alternatives and similar repositories for valor
Users that are interested in valor are comparing it to the libraries listed below
Sorting:
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 3 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 6 years ago
- ☆20Feb 18, 2025Updated last year
- Linked-Read Alignment Tool☆26May 16, 2019Updated 6 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago
- Search for activating regulatory variants in the tumor genome☆14Apr 11, 2025Updated 11 months ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Toolkit for automated and rapid discovery of structural variants☆24Aug 24, 2023Updated 2 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 5 years ago
- Collection of tools and resources for linked-reads☆13Apr 25, 2025Updated 10 months ago
- Genome-wide reconstruction of complex structural variants☆39Jun 21, 2022Updated 3 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆15Feb 19, 2026Updated last month
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Aug 18, 2020Updated 5 years ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 3 years ago
- ☆31Nov 25, 2019Updated 6 years ago
- PacBio hybrid error correction through iterative short read consensus☆60May 17, 2019Updated 6 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- ☆15Jul 3, 2018Updated 7 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated last year
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Mar 4, 2022Updated 4 years ago
- ☆10Nov 30, 2024Updated last year
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- ☆46Jun 21, 2020Updated 5 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 5 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago