BilkentCompGen / valorLinks
variation discovery using long range information in linked-reads
☆15Updated 4 years ago
Alternatives and similar repositories for valor
Users that are interested in valor are comparing it to the libraries listed below
Sorting:
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- ☆51Updated 6 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 9 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- ☆35Updated 4 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Population-wide Deletion Calling☆35Updated 8 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- SV genotyping with long reads☆40Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- ☆33Updated 3 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆48Updated 7 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 4 months ago