BilkentCompGen / valor
variation discovery using long range information in linked-reads
☆15Updated 3 years ago
Alternatives and similar repositories for valor:
Users that are interested in valor are comparing it to the libraries listed below
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 10 months ago
- Structural variant merging tool☆49Updated 8 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Population-wide Deletion Calling☆35Updated last week
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- SV genotyping with long reads☆40Updated last year
- Immuological gene typing and annotation for genome assembly☆35Updated last month
- ☆22Updated 4 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- ☆30Updated 5 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Variant annotation and merging pipeline☆33Updated 3 weeks ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated 9 months ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- ☆21Updated last week
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆21Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆22Updated 2 months ago
- Structural variant caller☆54Updated 3 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Updated 6 years ago
- Tumour-only somatic mutation calling using long reads☆26Updated 5 months ago
- ☆39Updated 7 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago