Concordance and contamination estimator for tumor–normal pairs
☆60Oct 22, 2024Updated last year
Alternatives and similar repositories for Conpair
Users that are interested in Conpair are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 4 years ago
- Software program for checking sample matching for NGS data☆141Jun 20, 2024Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆103Jun 20, 2026Updated last week
- Targeted and non-targeted anticancer drugs and drug regimens☆31Jun 20, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Apr 20, 2026Updated 2 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Apr 10, 2019Updated 7 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Jun 5, 2017Updated 9 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 4 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆163Feb 12, 2026Updated 4 months ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆64Jun 25, 2026Updated last week
- ☆46Nov 18, 2019Updated 6 years ago
- Utility functions for FACETS☆40Oct 24, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ASCAT R package☆202Feb 12, 2026Updated 4 months ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆61Jun 7, 2019Updated 7 years ago
- ☆42Feb 9, 2024Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆152Apr 16, 2026Updated 2 months ago
- ABRA2☆97Dec 2, 2022Updated 3 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 7 years ago
- runjob is a program for managing a group of related jobs running on a compute cluster☆11Mar 13, 2026Updated 3 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Personal Cancer Genome Reporter (PCGR)☆279Jun 23, 2026Updated last week
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆58Mar 29, 2021Updated 5 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆113Oct 16, 2025Updated 8 months ago
- Easy Copy Number !☆21Aug 27, 2025Updated 10 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 6 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 2 months ago
- Somatic copy variant caller (CNV) for next generation sequencing☆78Sep 12, 2024Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Jun 2, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆116Apr 2, 2025Updated last year
- Fast and accurate gene fusion detection from RNA-Seq data☆270Sep 21, 2025Updated 9 months ago
- ☆16May 8, 2023Updated 3 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- ☆37Jul 28, 2019Updated 6 years ago
- Mutational signature analysis for low statistics SNV data☆66Aug 7, 2024Updated last year
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆139Apr 27, 2026Updated 2 months ago