benoukraflab / NanoVar---archivedLinks
Archived version 1.0.2
☆16Updated 5 years ago
Alternatives and similar repositories for NanoVar---archived
Users that are interested in NanoVar---archived are comparing it to the libraries listed below
Sorting:
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last week
- Visualising discordant reads☆15Updated 9 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ☆21Updated 5 years ago
- ☆30Updated 5 years ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Transcript assembly and quantification for RNA-Seq☆8Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆14Updated last year
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 4 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 6 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago