benoukraflab / NanoVar---archivedLinks
Archived version 1.0.2
☆16Updated 5 years ago
Alternatives and similar repositories for NanoVar---archived
Users that are interested in NanoVar---archived are comparing it to the libraries listed below
Sorting:
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆21Updated 5 years ago
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Visualising discordant reads☆15Updated 10 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- scripts to parse IrysView output☆11Updated 10 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 9 months ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- ☆34Updated 5 years ago