Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data
☆20Aug 18, 2020Updated 5 years ago
Alternatives and similar repositories for OM-HiC-scaffolding
Users that are interested in OM-HiC-scaffolding are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- test repository☆29Jul 6, 2023Updated 2 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Oct 22, 2018Updated 7 years ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆12Nov 23, 2020Updated 5 years ago
- An easy way to run BioNano genomic analysis☆28Apr 9, 2021Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188May 17, 2024Updated last year
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 4 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆111Oct 2, 2020Updated 5 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- scripts to parse IrysView output☆39Sep 3, 2015Updated 10 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Updated this week
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 4 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)☆80Oct 12, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆67Jul 23, 2020Updated 5 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Nov 25, 2022Updated 3 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- ☆18Nov 16, 2015Updated 10 years ago
- Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences☆10Aug 1, 2016Updated 9 years ago
- A new algorithm for scaffolding☆10Sep 18, 2018Updated 7 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- a Sequencing Quality Assessment Tool☆17Jul 28, 2022Updated 3 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Aug 16, 2023Updated 2 years ago
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆66Dec 6, 2018Updated 7 years ago