mroosmalen / nanosv
SV caller for nanopore data
☆91Updated 4 years ago
Alternatives and similar repositories for nanosv:
Users that are interested in nanosv are comparing it to the libraries listed below
- Wally: Visualization of aligned sequencing reads and contigs☆112Updated 2 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated last month
- Phased assembly variant caller☆110Updated 3 months ago
- ☆47Updated 4 months ago
- source code for EVM☆109Updated 3 months ago
- accurate LiftOver tool for new genome assemblies☆124Updated 7 months ago
- Pipeline to convert a haploid assembly into diploid☆100Updated last month
- Tools for the analysis of structural variation in genomes☆78Updated 11 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 5 months ago
- Dfam Transposable Element Tools Docker container.☆88Updated last week
- A fast whole-genome aligner based on de Bruijn graphs☆142Updated last month
- Snakemake pipelines for nanopore sequencing data archiving and processing☆89Updated 3 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Mapping pipeline for data generated using Arima-HiC☆76Updated 9 months ago
- Research release basecalling models and configurations☆107Updated 9 months ago
- Pangenome-based genome inference☆125Updated last week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆138Updated 3 weeks ago
- Yet another k-mer analyzer☆131Updated 11 months ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆103Updated 2 months ago
- Collection of tools for the analysis of CpG data☆80Updated last month
- Structural Variant Index☆72Updated 3 months ago
- Toolkit for calling structural variants using short or long reads☆100Updated this week
- Long-read mock community experiments☆104Updated 3 years ago
- ☆70Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆73Updated 4 years ago