benedictpaten / marginAlignLinks
UCSC Nanopore
☆43Updated 5 years ago
Alternatives and similar repositories for marginAlign
Users that are interested in marginAlign are comparing it to the libraries listed below
Sorting:
- ☆80Updated 4 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- ☆48Updated last year
- Error correction of ONT transcript reads☆58Updated last year
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- ☆49Updated 8 months ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Linked-Read Alignment Tool☆27Updated 6 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Structural Variant Index☆75Updated 7 months ago
- Filter SAM file for soft and hard clipped alignments☆49Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆29Updated 4 years ago
- Structural variant caller☆54Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- ☆47Updated 5 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago