benedictpaten / marginAlignLinks
UCSC Nanopore
☆43Updated 5 years ago
Alternatives and similar repositories for marginAlign
Users that are interested in marginAlign are comparing it to the libraries listed below
Sorting:
- ☆81Updated 5 months ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- ☆49Updated 8 months ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Structural Variant Index☆75Updated 7 months ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- ☆48Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Structural variant caller☆54Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 8 months ago
- Long-read splice alignment with high accuracy☆64Updated 10 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago