UCSC Nanopore
☆44Aug 11, 2019Updated 6 years ago
Alternatives and similar repositories for marginAlign
Users that are interested in marginAlign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Oct 6, 2015Updated 10 years ago
- Analysis tool for Nanopore sequencing data☆34Apr 15, 2019Updated 6 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Jul 24, 2015Updated 10 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Apr 23, 2016Updated 9 years ago
- Experimental pipeline for correcting nanopore reads☆39May 23, 2017Updated 8 years ago
- ☆46Jul 6, 2017Updated 8 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47May 27, 2022Updated 3 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Jul 30, 2019Updated 6 years ago
- Nanopore desc☆18Aug 22, 2016Updated 9 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 8 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆25Dec 11, 2017Updated 8 years ago
- Tools for bam file processing☆55Apr 20, 2015Updated 10 years ago
- HMM-HDP models for MinION signal alignments☆46Apr 10, 2017Updated 8 years ago
- gvcf aggregation tool☆12Feb 7, 2018Updated 8 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 5 years ago
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 8 years ago
- Signal-level algorithms for MinION data☆594Aug 5, 2023Updated 2 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- An Oxford Nanopore Basecaller☆70Sep 4, 2021Updated 4 years ago
- Tools used to analyze data from nanopore-based experiments.☆31Feb 1, 2015Updated 11 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- Interactive visualization of assembly graphs☆83Apr 2, 2022Updated 3 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Mar 26, 2021Updated 4 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Dec 26, 2023Updated 2 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- example applications built using bíogo☆18Apr 19, 2021Updated 4 years ago
- This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on …☆14Sep 24, 2019Updated 6 years ago
- adapter trimmer for Oxford Nanopore reads☆385May 8, 2024Updated last year
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 4 months ago
- ☆35Feb 20, 2020Updated 6 years ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 5 years ago