Multi-sample transcriptome assembly from RNA-Seq
☆25Jun 10, 2018Updated 7 years ago
Alternatives and similar repositories for taco
Users that are interested in taco are comparing it to the libraries listed below
Sorting:
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Nov 9, 2025Updated 3 months ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- ☆26Oct 31, 2019Updated 6 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆108Jan 30, 2026Updated last month
- WGS (Wheat) Robust Assembly Pipeline☆22Sep 4, 2021Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Aug 9, 2012Updated 13 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Analysis tool for Nanopore sequencing data☆34Apr 15, 2019Updated 6 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 5 months ago
- ☆29Feb 5, 2026Updated last month
- Genome Annotation Without Nightmares☆46Feb 2, 2026Updated last month
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Feb 4, 2026Updated last month
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆35Dec 24, 2025Updated 2 months ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- OpenGL Powered Pretext Contact Map Viewer☆56Updated this week
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- ☆15Aug 6, 2025Updated 7 months ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- Galaxy Docker Image with Tools for Genome Annotation☆12Apr 20, 2021Updated 4 years ago
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Sep 28, 2018Updated 7 years ago
- ☆45Dec 11, 2025Updated 2 months ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- FastK based version of Merqury☆32Jan 19, 2026Updated last month
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 6 years ago
- Just Annotate My Genome☆19Sep 17, 2024Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆52Jun 5, 2018Updated 7 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆38Feb 15, 2025Updated last year
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Jan 30, 2025Updated last year