tacorna / taco
Multi-sample transcriptome assembly from RNA-Seq
☆22Updated 6 years ago
Alternatives and similar repositories for taco:
Users that are interested in taco are comparing it to the libraries listed below
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- A program for summarising CpG methylation patterns☆19Updated 8 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Updated 4 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 3 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 8 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Human pan-genome analysis pipeline☆29Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated 3 weeks ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago
- Immuological gene typing and annotation for genome assembly☆31Updated 4 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- ☆15Updated last month
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Command line tool to plot genomic coverage from a BAM file☆13Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago