tacorna / tacoLinks
Multi-sample transcriptome assembly from RNA-Seq
☆25Updated 7 years ago
Alternatives and similar repositories for taco
Users that are interested in taco are comparing it to the libraries listed below
Sorting:
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆28Updated 2 years ago
- ☆31Updated 3 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- ☆31Updated 5 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆34Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 10 months ago
- ☆37Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆27Updated this week
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- Population-wide Deletion Calling☆35Updated 5 months ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- ☆51Updated 6 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago