novoalab / Nano3P_SeqLinks
Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
☆12Updated last year
Alternatives and similar repositories for Nano3P_Seq
Users that are interested in Nano3P_Seq are comparing it to the libraries listed below
Sorting:
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- ☆36Updated 2 years ago
- ☆13Updated 2 years ago
- isoCirc☆10Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- Reconstruction of focal amplifications with long reads☆21Updated last week
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated 11 months ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- ☆19Updated 10 months ago
- ☆10Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- Long read to rMATS☆31Updated 2 years ago
- ☆18Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆34Updated 6 years ago
- ☆22Updated 6 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated 3 weeks ago
- Improving gene isoform quantification with miniQuant☆19Updated last month
- ☆19Updated 2 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 4 months ago
- The analysis pipeline for FLEP-seq☆14Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- ☆23Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- ☆37Updated 5 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago