novoalab / Nano3P_SeqLinks
Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
☆13Updated 3 months ago
Alternatives and similar repositories for Nano3P_Seq
Users that are interested in Nano3P_Seq are comparing it to the libraries listed below
Sorting:
- ☆38Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- isoCirc☆10Updated last year
- Long read to rMATS☆32Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated last month
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- ☆20Updated 3 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Updated last year
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 3 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- ☆23Updated 10 months ago
- ☆36Updated last year
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆32Updated 6 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆44Updated 3 months ago
- ☆13Updated 3 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 2 years ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆13Updated 3 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆41Updated this week
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated 3 weeks ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- Reconstruction of focal amplifications with long reads☆22Updated last week