polyApipe
☆19Feb 10, 2025Updated last year
Alternatives and similar repositories for polyApipe
Users that are interested in polyApipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Aug 26, 2024Updated last year
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆53Oct 16, 2022Updated 3 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Jul 22, 2025Updated 9 months ago
- bioinformatic pipeline for GLORI☆22Mar 30, 2026Updated last month
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆12Apr 5, 2026Updated 3 weeks ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆66Sep 12, 2023Updated 2 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆42Oct 1, 2021Updated 4 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆29Jan 29, 2026Updated 3 months ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Nov 15, 2021Updated 4 years ago
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Mar 31, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆27Oct 22, 2025Updated 6 months ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 4 months ago
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆15Mar 15, 2023Updated 3 years ago
- snakemake-based workflows☆12Jul 20, 2022Updated 3 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆35Nov 8, 2023Updated 2 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated 9 months ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆25Jun 14, 2024Updated last year
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated 2 years ago
- ☆16Jun 3, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Piranha is a peak-caller for CLIP- and RIP-seq data☆20Feb 7, 2018Updated 8 years ago
- Python implementation of Monocle☆31Aug 21, 2025Updated 8 months ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆25Dec 2, 2021Updated 4 years ago
- RNA editing tests☆17Sep 24, 2020Updated 5 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- ☆23May 6, 2024Updated last year
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆13May 8, 2025Updated 11 months ago
- ☆16Mar 12, 2021Updated 5 years ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆23Jan 15, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆33Nov 6, 2025Updated 5 months ago
- ☆64Mar 19, 2026Updated last month
- CWL+Singularity implementation of an RNA editing workflow☆40Dec 18, 2020Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆26Nov 17, 2022Updated 3 years ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆32Jul 20, 2021Updated 4 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated last year