polyApipe
☆23Feb 10, 2025Updated last year
Alternatives and similar repositories for polyApipe
Users that are interested in polyApipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Aug 26, 2024Updated 2 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated 2 years ago
- Model-based analysis of APA using 3' end-linked reads☆13Aug 14, 2021Updated 5 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆11Jan 26, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆54Oct 16, 2022Updated 3 years ago
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆17Mar 15, 2023Updated 3 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Aug 13, 2026Updated last month
- bioinformatic pipeline for GLORI☆25Mar 30, 2026Updated 5 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆33Jan 29, 2026Updated 7 months ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆14Apr 5, 2026Updated 5 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆68Sep 12, 2023Updated 3 years ago
- ☆11Mar 4, 2025Updated last year
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆44Oct 1, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- snakemake-based workflows☆12Jul 20, 2022Updated 4 years ago
- ☆27Oct 22, 2025Updated 10 months ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 9 months ago
- AIDA phase 1 splicing QTL paper☆16Feb 17, 2026Updated 7 months ago
- Nanopore 3' end-capture sequencing (Begik et al., Nat Methods 2022)☆15Aug 18, 2026Updated last month
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆37Nov 6, 2025Updated 10 months ago
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated 2 years ago
- Python implementation of Monocle☆38Aug 21, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆16Updated this week
- Piranha is a peak-caller for CLIP- and RIP-seq data☆21Feb 7, 2018Updated 8 years ago
- Isoform-level spatial transcriptomics analysis☆18May 3, 2026Updated 4 months ago
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Aug 27, 2026Updated 3 weeks ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆25Dec 2, 2021Updated 4 years ago
- RNA editing tests☆17Sep 24, 2020Updated 5 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆40Nov 8, 2023Updated 2 years ago
- The omnibenchmark CLI☆18Updated this week
- ☆17Mar 12, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆25May 6, 2024Updated 2 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- ☆68Mar 19, 2026Updated 6 months ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆26Jul 28, 2026Updated last month
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆26Nov 17, 2022Updated 3 years ago
- CWL+Singularity implementation of an RNA editing workflow☆40Dec 18, 2020Updated 5 years ago