MonashBioinformaticsPlatform / polyApipeLinks
polyApipe
☆19Updated 9 months ago
Alternatives and similar repositories for polyApipe
Users that are interested in polyApipe are comparing it to the libraries listed below
Sorting:
- ☆32Updated last year
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆20Updated 4 months ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated last month
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated last month
- A list of alternative splicing analysis resources☆46Updated 8 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 4 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- ☆52Updated last year
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆72Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 5 months ago
- ☆25Updated 4 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆39Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Updated 3 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆17Updated 5 months ago
- single-cell clustering based on alternative splicing landscapes☆23Updated last year
- A comprehensive toolkit for single-cell methylation sequencing data analysis☆28Updated last week
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆57Updated 3 weeks ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆14Updated 7 months ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Updated 5 years ago
- ☆36Updated 3 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆19Updated last week