☆15Sep 20, 2022Updated 3 years ago
Alternatives and similar repositories for deNovo-Detect
Users that are interested in deNovo-Detect are comparing it to the libraries listed below
Sorting:
- A tool for the calculation of RNA-editing index for RNA seq data☆45Jan 8, 2026Updated last month
- RNA editing quantification in deep transcriptome data☆16Jul 17, 2025Updated 7 months ago
- ☆60Jul 17, 2025Updated 7 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆20May 14, 2021Updated 4 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Jul 18, 2025Updated 7 months ago
- SNP-free RNA editing Identification Toolkit☆49Jan 7, 2025Updated last year
- A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal☆11Sep 7, 2022Updated 3 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 2 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated 7 months ago
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆12Sep 15, 2023Updated 2 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Nov 15, 2021Updated 4 years ago
- A tool for sniffing out the differences in vari-Ants☆38Jan 28, 2026Updated last month
- CNV analysis workflow code for the manuscript☆13Jun 22, 2020Updated 5 years ago
- ☆17Sep 16, 2024Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Jun 17, 2022Updated 3 years ago
- Haplotype phaser for next-generation sequencing data☆13Jan 13, 2022Updated 4 years ago
- ☆15May 27, 2025Updated 9 months ago
- ☆15Aug 25, 2022Updated 3 years ago
- ☆16Sep 21, 2021Updated 4 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated last year
- RNA editing tests☆17Sep 24, 2020Updated 5 years ago
- a tool to detect eccDNA using Illumina and ONT sequencing☆16Apr 20, 2024Updated last year
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Sep 2, 2025Updated 6 months ago
- ☆39Apr 25, 2023Updated 2 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Sep 5, 2023Updated 2 years ago
- ☆33Apr 11, 2025Updated 10 months ago
- Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models☆23Oct 22, 2018Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Dec 21, 2022Updated 3 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 4 years ago