Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data
☆22Feb 4, 2024Updated 2 years ago
Alternatives and similar repositories for DElegate
Users that are interested in DElegate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆10Jul 21, 2025Updated 11 months ago
- ☆15Jul 25, 2025Updated 11 months ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 4 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆15Jan 26, 2026Updated 5 months ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-cell analysis with non-negative matrix factorization☆49Jul 24, 2025Updated 11 months ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆16Jun 26, 2026Updated last week
- R package for analysing single cell data☆65Dec 8, 2022Updated 3 years ago
- Complex Heatmaps Using Base Graphics☆17Mar 29, 2026Updated 3 months ago
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 3 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated 2 years ago
- ☆224Jun 13, 2026Updated 2 weeks ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scWGCNA☆66Nov 8, 2022Updated 3 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆19Jan 18, 2026Updated 5 months ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 7 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆34May 22, 2026Updated last month
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated 11 months ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 10 months ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆18May 19, 2026Updated last month
- How research parasites can download your data!☆16Jul 24, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆49Oct 29, 2025Updated 8 months ago
- ☆20Aug 28, 2022Updated 3 years ago
- ☆17Jan 13, 2024Updated 2 years ago
- Measure Memory and CPU Usage of R Code☆22Jun 21, 2025Updated last year
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆102Apr 16, 2026Updated 2 months ago
- ☆18Oct 22, 2024Updated last year
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆23May 22, 2026Updated last month
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Legend made easy for matplotlib☆36Jun 13, 2026Updated 2 weeks ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 4 years ago
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆42Apr 23, 2024Updated 2 years ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 22, 2026Updated last week
- Fast Wilcoxon and auROC☆213May 5, 2026Updated last month
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- The Bioconductor Build System☆13Jun 18, 2026Updated 2 weeks ago