ZhaiLab-SUSTech / FLEPSeq
The analysis pipeline for FLEP-seq
☆14Updated last year
Alternatives and similar repositories for FLEPSeq:
Users that are interested in FLEPSeq are comparing it to the libraries listed below
- ☆10Updated 4 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated 11 months ago
- single-nucleus nanopore reads processing pipeline☆15Updated last year
- ☆23Updated 2 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated 11 months ago
- Long-read Isoform Quantification and Analysis☆39Updated last week
- isoCirc☆10Updated last year
- ☆21Updated last year
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆41Updated 2 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆18Updated 5 years ago
- ☆33Updated last year
- ☆18Updated 8 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated 5 months ago
- ☆36Updated 5 years ago
- ☆11Updated 5 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆37Updated last year
- scripts for analyzing the CVDC data.☆17Updated 5 years ago
- ☆18Updated 11 months ago
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆15Updated 2 years ago
- Long read to rMATS☆31Updated last year
- Python library for processing and visualizing Hi-C data