The analysis pipeline for FLEP-seq
☆18Aug 18, 2023Updated 3 years ago
Alternatives and similar repositories for FLEPSeq
Users that are interested in FLEPSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Sep 17, 2020Updated 6 years ago
- Nanopore 3' end-capture sequencing (Begik et al., Nat Methods 2022)☆16Aug 18, 2026Updated 2 months ago
- A multi-task neural network for predicting perturbation responses to Alternative Polyadenylation usage levels☆11May 18, 2023Updated 3 years ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated 2 years ago
- LoRTIA toolkit alpha version☆10Aug 19, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Aug 26, 2026Updated 2 months ago
- TSSr is an R/Bioconductor package for comprehensive analyses of transcription start site (TSS) data☆11Sep 21, 2026Updated last month
- ☆11Mar 2, 2024Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆60Oct 14, 2024Updated 2 years ago
- CELLEX (CELL-type EXpression-specificity)☆45Apr 29, 2026Updated 6 months ago
- Updated and optimized fork of BSMAP☆24Dec 28, 2020Updated 5 years ago
- Data Analysis For FLAM-Seq Third Generation RNA Sequencing☆10Jan 22, 2022Updated 4 years ago
- A set of files to do genomics analysis on python☆19Jun 5, 2025Updated last year
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆14Apr 5, 2026Updated 6 months ago
- RNA-seq Quantification of Alternative Polyadenylation☆54Mar 21, 2026Updated 7 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆40Nov 8, 2023Updated 2 years ago
- Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles☆15Aug 3, 2017Updated 9 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Jun 14, 2020Updated 6 years ago
- CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data☆11Jul 11, 2024Updated 2 years ago
- ☆68Mar 19, 2026Updated 7 months ago
- ☆25Dec 24, 2022Updated 3 years ago
- Anki 2.1.X 插件,支持从文本文件,Kindle生词本,以及有道生词本导入单词到Anki,并且使用柯林斯词典的语音,英英释义以及例句。☆10Oct 5, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bullseye analysis pipeline for DART-seq analysis☆16May 25, 2026Updated 5 months ago
- Transcript specific RNA splicing events lookup☆10Jun 22, 2026Updated 4 months ago
- Species-aware DNA language models capture regulatory elements and their evolution☆28Aug 21, 2023Updated 3 years ago
- Python implementation of TEISER also capable of using SHAPE structural probing data☆12Jan 7, 2025Updated last year
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆162Jan 25, 2024Updated 2 years ago
- ☆18Oct 22, 2024Updated 2 years ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- RNA modifications detection from Nanopore dRNA-Seq data☆88Aug 27, 2026Updated 2 months ago
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆173Aug 25, 2026Updated 2 months ago
- Full-Length Alternative Isoform analysis of RNA☆258Oct 23, 2026Updated last week
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- Identification of cell type-specific alternative splicing events using scASfind☆12Mar 23, 2024Updated 2 years ago
- polyApipe☆25Feb 10, 2025Updated last year
- Snakemake pipeline for running MAJIQ☆23Dec 20, 2023Updated 2 years ago