ZhaiLab-SUSTech / FLEPSeqLinks
The analysis pipeline for FLEP-seq
☆14Updated 2 years ago
Alternatives and similar repositories for FLEPSeq
Users that are interested in FLEPSeq are comparing it to the libraries listed below
Sorting:
- ☆10Updated 5 years ago
- single-nucleus nanopore reads processing pipeline☆16Updated 2 years ago
- ☆22Updated 2 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated 2 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- isoCirc☆10Updated last year
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Updated 5 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆13Updated 2 months ago
- ☆37Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆17Updated last year
- ☆12Updated 6 years ago
- bioinformatic pipeline for GLORI☆20Updated last year
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆15Updated this week
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆49Updated 3 months ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Updated 3 weeks ago
- ☆37Updated 6 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Updated 3 years ago
- ☆19Updated last year
- ☆24Updated 4 years ago
- ☆21Updated 5 years ago
- A Python implementation for BH-FDR and HiCCUPS☆51Updated 5 months ago
- scripts for analyzing the CVDC data.☆19Updated 5 years ago
- Detection and couting alternative TSS in single cells☆15Updated last year
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆18Updated 2 months ago
- Long read to rMATS☆32Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago