ZhaiLab-SUSTech / FLEPSeq

Related projects ⓘ

Alternatives and complementary repositories for FLEPSeq

• zhailab / polyAcaller
  ☆10Updated 4 years ago
• novoalab / Nano3P_Seq
  Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
  ☆12Updated last year
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆13Updated 7 months ago
• mirnylab / hiclib-legacy
  A legacy repository. Was replaced by distiller, cooler, and cooltools.
  ☆18Updated 4 years ago
• ZhaiLab-SUSTech / snuupy
  single-nucleus nanopore reads processing pipeline
  ☆15Updated last year
• mortazavilab / cerberus
  ☆16Updated 3 months ago
• ChenFengling / HiCpipe
  an efficient Hi-C data processing pipeline
  ☆15Updated 7 months ago
• XiaoTaoWang / domaincaller
  A Python implementation of the original DI domain caller
  ☆13Updated 4 years ago
• dixonlab / hic_breakfinder
  ☆35Updated 5 years ago
• Tian-Dechao / diffDomain
  DiffDomain is a statistically sound method for detecting differential TADs between conditions
  ☆14Updated last month
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆40Updated 2 years ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆17Updated 7 months ago
• Linlab-slu / TSSr
  ☆11Updated 3 weeks ago
• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆15Updated last year
• liucongcas / GLORI-tools
  bioinformatic pipeline for GLORI
  ☆18Updated 6 months ago
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆17Updated 4 years ago
• y9c / pseudoU-BIDseq
  🧪 New pipeline for detecting pseudouridine modification on RNA (BID-seq, etc)
  ☆15Updated 6 months ago
• GuoliangLi-HZAU / ChIA-PET_Tool_V3
  ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …
  ☆17Updated 4 months ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated 3 months ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated last year
• LappalainenLab / lorals_paper_code
  ☆24Updated 2 years ago
• Zhong-Lab-UCSD / HiCtool
  Python library for processing and visualizing Hi-C data
  ☆20Updated 4 years ago
• zhongmicai / Hic_tools_collection
  ☆10Updated 5 years ago
• MonashBioinformaticsPlatform / polyApipe
  polyApipe
  ☆12Updated last month
• anlin00007 / OnTAD
  An Optimized Nested TAD caller for Hi-C data
  ☆20Updated 3 years ago
• LappalainenLab / lorals
  ☆33Updated last year
• RitchieLabIGH / IRFinder
  ☆13Updated last year
• ucagenomix / sicelore-2.1
  ☆15Updated 2 weeks ago
• CSOgroup / CALDER
  ☆19Updated last year
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆35Updated 3 years ago