ZhaiLab-SUSTech / FLEPSeq

Related projects: ⓘ

• zhailab / polyAcaller
  ☆10Updated 4 years ago
• ZhaiLab-SUSTech / snuupy
  single-nucleus nanopore reads processing pipeline
  ☆15Updated last year
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆12Updated 5 months ago
• LappalainenLab / lorals
  ☆31Updated last year
• mortazavilab / cerberus
  ☆14Updated last month
• XiaoTaoWang / domaincaller
  A Python implementation of the original DI domain caller
  ☆13Updated 4 years ago
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆15Updated 4 months ago
• Xinglab / isoCirc
  isoCirc
  ☆10Updated 9 months ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆17Updated 5 months ago
• LappalainenLab / lorals_paper_code
  ☆23Updated 2 years ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆17Updated last year
• ChenFengling / HiCpipe
  an efficient Hi-C data processing pipeline
  ☆15Updated 5 months ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆15Updated 3 years ago
• mirnylab / hiclib-legacy
  A legacy repository. Was replaced by distiller, cooler, and cooltools.
  ☆17Updated 4 years ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆19Updated last year
• novoalab / Nano3P_Seq
  Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
  ☆11Updated last year
• biocorecrg / ExOrthist
  ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
  ☆21Updated last year
• hsinyenwu / RiboPlotR
  RiboPlotR package for Ribo-plot
  ☆13Updated last year
• LUMC / fastqsplitter
  Splits fastq files evenly
  ☆17Updated 4 years ago
• BlanchetteLab / HIFI
  Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
  ☆23Updated last year
• awjga / PORE-cupine
  First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing
  ☆14Updated last year
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆39Updated 2 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆23Updated 2 months ago
• magnitov / pentad
  A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.
  ☆13Updated last year
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆14Updated 5 years ago
• Tian-Dechao / diffDomain
  DiffDomain is a statistically sound method for detecting differential TADs between conditions
  ☆13Updated 3 weeks ago
• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆14Updated last year
• Zhong-Lab-UCSD / HiCtool
  Python library for processing and visualizing Hi-C data
  ☆19Updated 4 years ago
• MonashBioinformaticsPlatform / polyApipe
  polyApipe
  ☆11Updated last month
• liangfan01 / pipeline-for-isoseq
  ☆14Updated 6 years ago