Alternatives and similar repositories for VplotR

Users that are interested in VplotR are comparing it to the libraries listed below

• AndreasHeger / gat
  Genomic Association Tester
  ☆33Updated 2 years ago
• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆26Updated 8 months ago
• Xinglab / rMATS-long
  ☆34Updated this week
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆41Updated 3 years ago
• parklab / MuSiCal
  A comprehensive toolkit for mutational signature analysis
  ☆42Updated last year
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆28Updated 6 years ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆61Updated 5 months ago
• hellbelly / BS-Snper
  ☆38Updated 4 years ago
• cortes-ciriano-lab / ReConPlot
  ☆23Updated 11 months ago
• novoalab / Nano3P_Seq
  Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
  ☆13Updated 4 months ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆49Updated this week
• kundajelab / idr
  IDR
  ☆30Updated 2 years ago
• plantformatics / Socrates
  ☆23Updated 8 months ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆51Updated 2 years ago
• vaquerizaslab / tadtool
  TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
  ☆48Updated 3 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆64Updated last year
• Henikoff / Cut-and-Run
  ☆32Updated 7 years ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated last year
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 5 years ago
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆23Updated 2 years ago
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 6 months ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 7 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• smithlabcode / methpipe
  A pipeline for analyzing DNA methylation data from bisulfite sequencing.
  ☆71Updated 3 years ago
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆37Updated 4 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago