R package to easily generate "V-plots" of paired-end sequencing data over regions of interest
☆11Dec 1, 2023Updated 2 years ago
Alternatives and similar repositories for VplotR
Users that are interested in VplotR are comparing it to the libraries listed below
Sorting:
- Analyzing Hi-C data in R with HiCExperiment objects☆16Mar 18, 2025Updated last year
- Orchestrating Hi-C analysis with Bioconductor☆11Jul 11, 2025Updated 8 months ago
- Develop and host GitHub actions for Bioconductor☆11Apr 22, 2021Updated 4 years ago
- ☆23Jan 7, 2026Updated 2 months ago
- ☆15Sep 20, 2022Updated 3 years ago
- Annotate 2D point clouds using overlay polygons☆15Jun 19, 2025Updated 9 months ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- ☆16Nov 25, 2019Updated 6 years ago
- a tool to detect eccDNA using Illumina and ONT sequencing☆16Apr 20, 2024Updated last year
- ☆14Mar 18, 2016Updated 10 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Dec 21, 2022Updated 3 years ago
- ☆32Jul 20, 2018Updated 7 years ago
- Biwhitened PCA☆14Updated this week
- Genetics training camp☆21Sep 8, 2020Updated 5 years ago
- Transposable Elements MOvement detection using LOng reads☆25Jul 24, 2025Updated 7 months ago
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated last month
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- Structure learning based for zero-inflated negative binomial data☆10Jul 11, 2024Updated last year
- Drosophila transposable element canonical sequences☆29Jul 11, 2022Updated 3 years ago
- Importing and manipulating Hi-C data in R☆12Jul 17, 2025Updated 8 months ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Dec 15, 2021Updated 4 years ago
- iCount, protein-RNA interaction analytics☆23Dec 14, 2021Updated 4 years ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- SRF: Satellite Repeat Finder☆103Jan 8, 2024Updated 2 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- Cookiecutter for snakemake slurm profile☆15Jul 22, 2023Updated 2 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Nov 15, 2021Updated 4 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- Datably.ai☆17Jun 17, 2025Updated 9 months ago
- ☆10Jul 1, 2020Updated 5 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated 8 months ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated 7 months ago
- Applying IDR analysis to Homer peaks.☆15May 8, 2020Updated 5 years ago
- Estimating repeat spectra and genome length from low-coverage genome skims☆12Aug 6, 2023Updated 2 years ago
- Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming/sorting contigs and converting FASTQ to FASTA.…☆16Feb 3, 2026Updated last month