js2264 / VplotRLinks
R package to easily generate "V-plots" of paired-end sequencing data over regions of interest
☆11Updated last year
Alternatives and similar repositories for VplotR
Users that are interested in VplotR are comparing it to the libraries listed below
Sorting:
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- ☆23Updated 9 months ago
- ☆32Updated 9 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆13Updated 2 months ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- 4C-seq processing pipeline☆24Updated 6 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆22Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Genomic Association Tester☆32Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 4 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 4 months ago
- Evolutionary Transcriptomics with R☆45Updated 3 weeks ago
- ☆37Updated 6 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated this week
- ☆13Updated 3 years ago
- ☆16Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆22Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- ⛏ HLA predictions from NGS shotgun data☆54Updated 3 months ago
- ☆31Updated 7 years ago