js2264 / VplotRLinks
R package to easily generate "V-plots" of paired-end sequencing data over regions of interest
☆11Updated last year
Alternatives and similar repositories for VplotR
Users that are interested in VplotR are comparing it to the libraries listed below
Sorting:
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆13Updated 3 months ago
- ☆38Updated 4 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- ☆23Updated 9 months ago
- Genomic Association Tester☆32Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆22Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 4 months ago
- 4C-seq processing pipeline☆25Updated 6 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 3 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- ☆17Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- BigWig and BAM utilities☆97Updated last year
- ☆32Updated 10 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated 3 weeks ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆22Updated 2 years ago
- Evolutionary Transcriptomics with R☆45Updated this week
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- IDR☆30Updated 2 years ago
- ☆31Updated 7 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 6 months ago
- ☆37Updated 6 years ago