Alternatives and similar repositories for scripts-general-use

Users that are interested in scripts-general-use are comparing it to the libraries listed below

• js2264 / tidyCoverage
  ☆22Updated last year
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆20Updated 8 years ago
• cxli233 / customized_upset_plots
  Make customized upset plots: from raw data to plots
  ☆61Updated 2 weeks ago
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆21Updated last month
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated this week
• NBISweden / workshop-mlbiostatistics
  Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods
  ☆16Updated 3 months ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 3 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated last year
• cxli233 / ggtraces
  A tidyverse and grammar of graphics powered line traces visualizer
  ☆30Updated 2 weeks ago
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 4 years ago
• jokergoo / KeywordsEnrichment
  ☆32Updated last year
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• lfresard / blood_rnaseq_rare_disease_paper
  ☆29Updated 5 years ago
• grimmlab / BookChapter-RNA-Seq-Analyses
  Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis
  ☆40Updated 4 years ago
• knausb / vcfR_documentation
  Documentation for vcfR
  ☆11Updated 4 months ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated 3 months ago
• Kuanhao-Chao / RNASeqR
  📊 An R package of RNA-seq workflow
  ☆15Updated 3 years ago
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated 2 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated this week
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆25Updated 3 months ago
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆66Updated last year
• UMMS-Biocore / debrowser
  Differential Count Data Analysis Toolbox
  ☆61Updated last year
• bioinformatics-core-shared-training / shiny-bioinformatics
  http://tinyurl.com/cruk-shiny
  ☆11Updated 8 years ago
• sonali-bioc / UncertaintyRNA
  This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…
  ☆28Updated last year
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 3 months ago
• gtonkinhill / TCGA_analysis
  ☆27Updated 2 years ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 4 years ago
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆68Updated 7 months ago
• Novartis / easyTrackHubs
  This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…
  ☆28Updated last year