Acribbs / TallyNN
single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)
☆13Updated last year
Alternatives and similar repositories for TallyNN:
Users that are interested in TallyNN are comparing it to the libraries listed below
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated last year
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆15Updated 10 months ago
- ☆18Updated 7 months ago
- Transposable element databases☆13Updated 2 years ago
- ☆8Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆20Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- ☆20Updated last week
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆28Updated 2 months ago
- ☆16Updated 9 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆20Updated last year
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- ☆12Updated 3 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated this week
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated last week
- A collection of perl scripts for NGS analysis☆13Updated 5 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last week
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Updated 4 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- A pipeline for Smooth-seq data analysis.☆10Updated 3 years ago