Alternatives and similar repositories for lorals

Users that are interested in lorals are comparing it to the libraries listed below

• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆14Updated last year
• LappalainenLab / lorals_paper_code
  ☆26Updated 3 years ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated 2 months ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆42Updated last year
• cortes-ciriano-lab / ReConPlot
  ☆22Updated 5 months ago
• mortazavilab / cerberus
  ☆19Updated 10 months ago
• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆25Updated last month
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆22Updated 2 years ago
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆44Updated 2 months ago
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆21Updated last week
• KolmogorovLab / minda
  ☆18Updated last month
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆29Updated 3 weeks ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆39Updated 10 months ago
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 4 years ago
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆18Updated last year
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆47Updated 2 years ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆28Updated last year
• novoalab / Nano3P_Seq
  Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
  ☆12Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• dixonlab / hic_breakfinder
  ☆37Updated 5 years ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆60Updated 7 months ago
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆30Updated last year
• gaoyubang / nanom6A
  ☆23Updated 2 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated 2 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• zyndagj / BSMAPz
  Updated and optimized fork of BSMAP
  ☆22Updated 4 years ago
• DyogenIBENS / FINSURF
  FINSURF is a tool designed to analyse lists of sequences variants in the human genome.
  ☆12Updated 2 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆49Updated 9 months ago