Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
☆15Apr 4, 2024Updated 2 years ago
Alternatives and similar repositories for BamSlam
Users that are interested in BamSlam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆13May 8, 2025Updated 11 months ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆17Mar 30, 2026Updated 2 weeks ago
- SingleCell Nanopore sequencing data analysis☆65May 30, 2025Updated 10 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆66Oct 11, 2024Updated last year
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Nov 29, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆21Feb 1, 2026Updated 2 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 11 months ago
- ☆31Nov 28, 2024Updated last year
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Nov 8, 2023Updated 2 years ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing effici…☆13Feb 13, 2019Updated 7 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated 7 months ago
- Demultiplexing and debarcoding tool designed for LR-Split-seq data.☆25Oct 19, 2023Updated 2 years ago
- cDNA read preprocessing☆87Jul 25, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Aug 5, 2020Updated 5 years ago
- A Python library to visualize and analyze long-read transcriptomes☆67Jan 19, 2026Updated 2 months ago
- ☆106Jan 23, 2026Updated 2 months ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆22Apr 29, 2024Updated last year
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated 9 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆155Jan 23, 2026Updated 2 months ago
- ☆20Sep 8, 2023Updated 2 years ago
- ☆39Apr 25, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- De novo construction of isoforms from long-read data☆35Jun 10, 2025Updated 10 months ago
- ☆64Mar 19, 2026Updated 3 weeks ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- ☆11Sep 23, 2022Updated 3 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆12Dec 11, 2025Updated 4 months ago
- ☆22Jul 30, 2025Updated 8 months ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆16Jul 26, 2017Updated 8 years ago
- Nanopore Real-Time Analysis Tool☆17Sep 4, 2024Updated last year
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆43Mar 21, 2026Updated 3 weeks ago
- Full-length transcriptome splicing and mutation analysis☆90Mar 23, 2026Updated 3 weeks ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆236Updated this week
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆19Mar 28, 2026Updated 2 weeks ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Mar 13, 2026Updated last month