Henikoff / Cut-and-RunLinks
☆30Updated 6 years ago
Alternatives and similar repositories for Cut-and-Run
Users that are interested in Cut-and-Run are comparing it to the libraries listed below
Sorting:
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Tutorial Website☆59Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 5 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- ATAC-seq processing pipeline☆33Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 7 months ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 6 years ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- Tools for analyzing DNA methylation data☆42Updated this week
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- Genomic Association Tester☆31Updated 2 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 3 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 5 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆46Updated 2 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆27Updated 4 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 11 months ago
- ☆17Updated 6 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- ☆58Updated 3 years ago