☆34Jul 20, 2018Updated 8 years ago
Alternatives and similar repositories for Cut-and-Run
Users that are interested in Cut-and-Run are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆123Jan 15, 2023Updated 3 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆20May 26, 2025Updated last year
- Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data☆10Dec 23, 2019Updated 6 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Oct 22, 2026Updated 2 weeks ago
- A shiny-based web tool for interactive analysis of DepMap data☆25Feb 13, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆116Oct 26, 2026Updated last week
- Analyse enhancer strength based on MPRA experiments.☆13Nov 12, 2020Updated 5 years ago
- Example scripts for analyzing CUT&RUN datasets☆13Oct 3, 2018Updated 8 years ago
- Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.☆12Sep 12, 2025Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 6 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆202Jan 30, 2026Updated 9 months ago
- Analysis and Visualization of Ribosome Profiling Data☆12Dec 14, 2019Updated 6 years ago
- Allele-specific alignment sorting☆65Oct 14, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆18May 12, 2023Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 9 months ago
- Tutorial Website☆68Feb 1, 2021Updated 5 years ago
- Detecting sites of genomic enrichment☆205Sep 20, 2026Updated last month
- SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.☆11Jan 26, 2018Updated 8 years ago
- Nanopore 3' end-capture sequencing (Begik et al., Nat Methods 2022)☆16Aug 18, 2026Updated 2 months ago
- HMMRATAC peak caller for ATAC-seq data☆101Nov 12, 2024Updated last year
- An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts☆19Aug 14, 2025Updated last year
- Intro to ChIPseq using HPC☆323Jan 30, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆23Oct 15, 2024Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 7 years ago
- Pipeline for analysis of Dropseq single cell data☆11Nov 14, 2024Updated last year
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆151Oct 28, 2023Updated 3 years ago
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Mar 21, 2021Updated 5 years ago
- Fully automated generation of UCSC assembly hubs☆34Oct 2, 2024Updated 2 years ago
- MultiQC plugin for bcbio_nextgen pipeline☆10Oct 29, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- IDR☆30Mar 30, 2023Updated 3 years ago
- Applying IDR analysis to Homer peaks.☆20May 8, 2020Updated 6 years ago
- Suite of tools for processing BRB-seq data☆31Jan 19, 2026Updated 9 months ago
- CUT&RUN and CUT&Tag data processing and analysis☆118Mar 4, 2025Updated last year
- Improved Ribo-seq enables identification of cryptic translation events☆17Feb 13, 2018Updated 8 years ago
- A small R package to make sequencing read coverage plots in R.☆43Apr 3, 2026Updated 7 months ago
- 4C-seq processing pipeline☆28Mar 17, 2025Updated last year