Fully Automated and Standardized (FAST) iCLIP analysis pipeline.
☆22Oct 7, 2017Updated 8 years ago
Alternatives and similar repositories for FAST-iCLIP
Users that are interested in FAST-iCLIP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to identify CLIP-seq peaks☆72Oct 31, 2025Updated 8 months ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆11Feb 10, 2024Updated 2 years ago
- Skip the peaks and expose RNA-binding in CLIP data☆10Jul 10, 2026Updated last week
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Oct 3, 2016Updated 9 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Detecting intron retention from RNA-Seq experiments☆54Jul 17, 2024Updated 2 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- class materials for MCB517A through UW/Fred Hutch☆12Dec 5, 2019Updated 6 years ago
- ☆12Mar 19, 2026Updated 4 months ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 10 years ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Jul 31, 2017Updated 8 years ago
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- ☆10Jan 29, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Complete analysis pipeline for PAR-CLIP data☆10May 7, 2015Updated 11 years ago
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 5 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆27Mar 9, 2026Updated 4 months ago
- Slides for my talk at RUG Barcelona 2017-06-13☆12Jun 13, 2017Updated 9 years ago
- ☆14Mar 18, 2016Updated 10 years ago
- ☆33Jul 20, 2018Updated 8 years ago
- ☆13Jun 24, 2019Updated 7 years ago
- Best practices for readable, sharable, and verifiable R code☆18Mar 26, 2019Updated 7 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Mar 13, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NGS Tutorial☆15Apr 22, 2017Updated 9 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Sep 5, 2019Updated 6 years ago
- An Interactive Consensus Clustering framework for Cross-platform data analysis☆14Jan 28, 2022Updated 4 years ago
- Texts and assets for the Sociocracy 3.0 Canvas Series☆16May 21, 2024Updated 2 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- ☆12Sep 27, 2021Updated 4 years ago
- ☆21May 27, 2024Updated 2 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆13May 19, 2021Updated 5 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 9 months ago
- my commonly used perl script☆20Aug 28, 2020Updated 5 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆12Mar 11, 2020Updated 6 years ago
- Integrative clustering for heterogeneous biomedical datasets.☆16May 4, 2020Updated 6 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- PSI-Sigma☆42Nov 10, 2023Updated 2 years ago
- An interactive web-tool for RNA-seq analysis☆70May 21, 2026Updated 2 months ago