ChangLab / FAST-iCLIPLinks
Fully Automated and Standardized (FAST) iCLIP analysis pipeline.
☆22Updated 8 years ago
Alternatives and similar repositories for FAST-iCLIP
Users that are interested in FAST-iCLIP are comparing it to the libraries listed below
Sorting:
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- ☆32Updated 7 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- ☆39Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 2 weeks ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆45Updated 8 years ago
- Tutorial Website☆63Updated 5 years ago
- ☆33Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 4 months ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Utility functions for FACETS☆39Updated 3 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Motif manipulation functions for R.☆30Updated 4 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- Ultraperformant reimplementation of SICER☆58Updated 2 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆73Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆50Updated 6 months ago
- ☆75Updated 2 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago