gagneurlab / SpeciesLMLinks
Species-aware DNA language models capture regulatory elements and their evolution
☆25Updated 2 years ago
Alternatives and similar repositories for SpeciesLM
Users that are interested in SpeciesLM are comparing it to the libraries listed below
Sorting:
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated last month
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 11 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated last month
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆17Updated 8 months ago
- ☆36Updated last year
- Associated code for EvoWeaver publication☆15Updated 5 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- ☆29Updated 2 years ago
- A library for counting small kmer frequencies in nucleotide sequences.☆28Updated last year
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆57Updated 8 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆32Updated 7 months ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- Scoring GT/AG sites for improving spliced alignment☆46Updated last month
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Updated 5 years ago
- ☆21Updated last week
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Updated 3 years ago
- Read, parse and operate different multiple input file formats with OpenVariant☆14Updated 5 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆20Updated 3 years ago
- Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2☆13Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated 11 months ago
- ☆18Updated last year
- Complete assemblies of non-human primate genomes☆52Updated 5 months ago
- ☆34Updated 2 years ago
- ☆39Updated 2 years ago
- Python bindings for the TaxonKit library☆40Updated 4 months ago
- Modelling insertion efficiency for Prime Insertion Experiments☆13Updated last year
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago