gagneurlab / SpeciesLMLinks
Species-aware DNA language models capture regulatory elements and their evolution
☆27Updated 2 years ago
Alternatives and similar repositories for SpeciesLM
Users that are interested in SpeciesLM are comparing it to the libraries listed below
Sorting:
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆58Updated 9 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated last month
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- Associated code for EvoWeaver publication☆16Updated 7 months ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Updated 7 years ago
- A neural network model to predict splice site usage and splicing-altering mutations☆15Updated 4 months ago
- ☆37Updated last year
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Updated 4 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆35Updated 3 weeks ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- Scoring GT/AG sites for improving spliced alignment☆48Updated last month
- ☆39Updated 5 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- A tool for visualising kmers in 2D space.☆12Updated 9 months ago
- A library for counting small kmer frequencies in nucleotide sequences.☆28Updated last year
- Generate robust DNA barcode sets☆33Updated last year
- Read, parse and operate different multiple input file formats with OpenVariant☆14Updated 3 weeks ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- off-targeting assessment of Cas9 gRNAs☆15Updated 4 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- ☆18Updated last year
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Updated 8 years ago
- ☆83Updated last month
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Updated 3 years ago
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆13Updated 8 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago