nanoporetech / pipeline-polya-diffLinks
Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish
☆11Updated 5 years ago
Alternatives and similar repositories for pipeline-polya-diff
Users that are interested in pipeline-polya-diff are comparing it to the libraries listed below
Sorting:
- ☆31Updated last month
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆45Updated 4 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Structural variant caller for low-depth long-read sequencing data☆28Updated 10 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- ☆30Updated 4 years ago
- Pipeline for calling poly(A) tail lengths from nanopore direct RNA data using nanopolish☆10Updated 5 years ago
- ☆31Updated last year
- ☆82Updated 8 months ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- A battery of methylation tools for PacBio HiFi reads☆43Updated 2 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 4 months ago
- SV genotyping with long reads☆40Updated 2 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- Variant annotation and merging pipeline☆39Updated 3 months ago
- ☆50Updated last month
- ☆79Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago