Runsheng / trackclusterLinks
An analysis pipeline for Nanopore direct-RNA sequencing
☆13Updated 7 months ago
Alternatives and similar repositories for trackcluster
Users that are interested in trackcluster are comparing it to the libraries listed below
Sorting:
- ☆36Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- A gene fusion caller for long-read transcriptome sequencing data.☆19Updated last year
- Invertory of TE-gene isoforms☆11Updated last year
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆23Updated 3 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- ☆19Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 10 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆62Updated 2 weeks ago
- Improving gene isoform quantification with miniQuant☆23Updated 2 weeks ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last week
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 2 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆27Updated last week
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Updated 7 months ago
- ☆33Updated last year
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- ☆26Updated 3 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 7 months ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 4 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- ☆31Updated last year
- Scoring GT/AG sites for improving spliced alignment☆45Updated this week
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago