Runsheng / trackclusterLinks
An analysis pipeline for Nanopore direct-RNA sequencing
☆13Updated 6 months ago
Alternatives and similar repositories for trackcluster
Users that are interested in trackcluster are comparing it to the libraries listed below
Sorting:
- A gene fusion caller for long-read transcriptome sequencing data.☆18Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆29Updated 3 weeks ago
- Snakemake pipeline to analyze transposable element 'omics data.☆20Updated this week
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- Invertory of TE-gene isoforms☆11Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- ☆36Updated 2 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆9Updated 3 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆15Updated last month
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- Analyse RNA feature distributions.☆16Updated 5 months ago
- ☆19Updated 2 years ago
- ☆17Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Command line tool to plot genomic coverage from a BAM file☆13Updated 2 years ago
- Yet another Hi-C scaffolding tool☆19Updated 7 months ago
- Tumour-only somatic mutation calling using long reads☆26Updated 7 months ago
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆23Updated last month
- ☆21Updated 3 months ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 3 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 11 months ago