Runsheng / trackcluster
An analysis pipeline for Nanopore direct-RNA sequencing
☆12Updated 2 months ago
Alternatives and similar repositories for trackcluster:
Users that are interested in trackcluster are comparing it to the libraries listed below
- A gene fusion caller for long-read transcriptome sequencing data.☆17Updated 9 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 9 months ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 9 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- ☆17Updated 2 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- ☆14Updated 9 months ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆19Updated 2 weeks ago
- ☆16Updated 4 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆42Updated 3 months ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆9Updated 3 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated last year
- GENE-SWitCH project RNA-Seq analysis pipeline☆24Updated 8 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 7 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 4 months ago
- A tool for motif annotation and visualization in tandem repeats.☆10Updated 4 months ago
- ☆33Updated last year
- ☆31Updated 5 years ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆14Updated 3 weeks ago
- Error correction of ONT transcript reads☆58Updated last year
- Command line tool to plot genomic coverage from a BAM file☆13Updated last year
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆21Updated 6 months ago
- ☆37Updated 4 months ago