AdelmanLab / NIH_scriptsLinks
A collection of perl scripts for NGS analysis
☆16Updated 10 months ago
Alternatives and similar repositories for NIH_scripts
Users that are interested in NIH_scripts are comparing it to the libraries listed below
Sorting:
- ☆20Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- scGRO-seq analyses codes☆13Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- ☆49Updated last year
- ☆12Updated 5 years ago
- ☆11Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- ☆18Updated 4 years ago
- ☆17Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 4 months ago
- ☆12Updated 4 years ago
- ☆23Updated 3 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆15Updated 5 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- ☆25Updated last year
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago