AdelmanLab / NIH_scripts

Related projects ⓘ

Alternatives and complementary repositories for NIH_scripts

• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆23Updated 2 years ago
• wenweixiong / MARVEL
  ☆41Updated 3 months ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆12Updated 2 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆14Updated 2 years ago
• vallotlab / ChromSCape
  ChromSCape
  ☆14Updated 10 months ago
• veltenlab / mitoClone
  ☆12Updated 3 years ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated last year
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆15Updated 2 years ago
• XiaoTaoWang / StripeCaller
  A toolkit for analyzing architectural stripes
  ☆19Updated 3 years ago
• wulabupenn / scNT-seq
  Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)
  ☆16Updated last year
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆20Updated last year
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆24Updated 6 months ago
• mckellardw / STRS
  Suite of analysis tools for spatial total RNA-sequencing
  ☆11Updated last year
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆29Updated 2 years ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• cole-trapnell-lab / pseudospace
  ☆11Updated 5 years ago
• flemingtonlab / SpliceTools
  ☆18Updated 4 months ago
• Acribbs / TallyNN
  single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)
  ☆13Updated last year
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆19Updated last year
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆12Updated 5 years ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆22Updated 2 years ago
• ma-compbio / scGHOST
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
  ☆18Updated 7 months ago
• Christina-hshi / psirc
  Full-length linear and circular transcript isoform reconstruction and quantification
  ☆11Updated 5 months ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆15Updated 4 years ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• jaymahat / scGROseq
  scGRO-seq analyses codes
  ☆10Updated 10 months ago
• songlab-cal / scquint
  ☆15Updated 5 months ago
• chensong611 / SNARE_prep
  dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline
  ☆9Updated 5 years ago
• OSCA-source / OSCA.advanced
  Advanced steps of the OSCA book
  ☆12Updated 3 weeks ago