AdelmanLab / NIH_scriptsLinks
A collection of perl scripts for NGS analysis
☆17Updated last year
Alternatives and similar repositories for NIH_scripts
Users that are interested in NIH_scripts are comparing it to the libraries listed below
Sorting:
- ☆20Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- scGRO-seq analyses codes☆13Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 3 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Updated last year
- A toolkit for analyzing architectural stripes☆20Updated last year
- ☆12Updated 6 years ago
- ☆19Updated 5 years ago
- ☆18Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ☆12Updated 4 years ago
- ChromSCape☆14Updated 5 months ago
- ☆26Updated 2 years ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Updated 3 years ago
- ☆25Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- scover☆24Updated 2 years ago
- ☆13Updated 4 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated last month
- ☆19Updated 2 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 9 months ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- https://molecular-neurogenetics.github.io/truster/☆11Updated 6 months ago
- ☆53Updated last year
- Benchmarking long-read RNA-seq analysis tools☆27Updated 11 months ago
- Paired Insertion Counting for snATAC-seq data☆18Updated 8 months ago