Alternatives and similar repositories for polyAcaller:

Users that are interested in polyAcaller are comparing it to the libraries listed below

• ZhaiLab-SUSTech / FLEPSeq
  The analysis pipeline for FLEP-seq
  ☆14Updated last year
• Xinglab / isoCirc
  isoCirc
  ☆10Updated last year
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆16Updated last year
• mortazavilab / cerberus
  ☆19Updated 8 months ago
• ZhaiLab-SUSTech / snuupy
  single-nucleus nanopore reads processing pipeline
  ☆15Updated last year
• CSOgroup / CALDER
  ☆22Updated last year
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• scoutzxb / CscoreTool
  ☆20Updated 4 years ago
• novoalab / Nano3P_Seq
  Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
  ☆12Updated last year
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated last year
• LappalainenLab / lorals
  ☆33Updated 2 years ago
• LappalainenLab / lorals_paper_code
  ☆23Updated 2 years ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆18Updated 2 years ago
• zhongmicai / Hic_tools_collection
  ☆11Updated 5 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆24Updated 9 months ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated last year
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆18Updated 6 years ago
• XiDsLab / TAGET
  ☆18Updated 2 years ago
• dekkerlab / matrix_paper
  Scripts and notebooks used in Akgol Oksuz et al. paper
  ☆11Updated 4 years ago
• mirnylab / hiclib-legacy
  A legacy repository. Was replaced by distiller, cooler, and cooltools.
  ☆18Updated 5 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated last year
• YeoLab / gscripts
  General Use Scripts and Helper functions
  ☆16Updated 7 years ago
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆38Updated 3 years ago
• Xinglab / rMATS-long
  ☆28Updated 4 months ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 5 years ago
• dixonlab / hic_breakfinder
  ☆37Updated 5 years ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆14Updated last year
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• a2iEditing / deNovo-Detect
  ☆12Updated 2 years ago