☆11Sep 17, 2020Updated 5 years ago
Alternatives and similar repositories for polyAcaller
Users that are interested in polyAcaller are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The analysis pipeline for FLEP-seq☆17Aug 18, 2023Updated 2 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated 11 months ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- ☆15May 31, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- TSSr is an R/Bioconductor package for comprehensive analyses of transcription start site (TSS) data☆11May 7, 2026Updated last month
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 8 years ago
- A set of files to do genomics analysis on python☆19Jun 5, 2025Updated last year
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- ☆65Mar 19, 2026Updated 2 months ago
- CELLEX (CELL-type EXpression-specificity)☆44Apr 29, 2026Updated last month
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Jul 8, 2022Updated 3 years ago
- De novo adapter prediction algorithm for small RNA sequencing data☆24Mar 23, 2017Updated 9 years ago
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆23Jun 5, 2018Updated 8 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- ☆18Oct 22, 2024Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Oct 14, 2024Updated last year
- Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced cou…☆19Sep 29, 2025Updated 8 months ago
- Peak calling tool for CLIP-seq data☆14Apr 7, 2021Updated 5 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆67Oct 11, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 4 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated 2 years ago
- Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The n…☆20Oct 27, 2021Updated 4 years ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88May 19, 2026Updated 3 weeks ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A high-performance search engine for large-scale genomic interval datasets☆20Sep 1, 2021Updated 4 years ago
- ☆27May 8, 2022Updated 4 years ago
- VirusScan Pipeline☆12Feb 7, 2026Updated 4 months ago
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 2 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- ☆15Jan 28, 2023Updated 3 years ago