shimlab / NanoSplicerLinks
☆31Updated last year
Alternatives and similar repositories for NanoSplicer
Users that are interested in NanoSplicer are comparing it to the libraries listed below
Sorting:
- ☆38Updated 2 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 6 months ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆57Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- Long read to rMATS☆32Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- SingleCell Nanopore sequencing data analysis☆63Updated 7 months ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- ☆20Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆37Updated last month
- ☆38Updated last year
- ☆34Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Updated 2 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆59Updated 11 months ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Updated 6 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Updated 10 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆24Updated this week
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆15Updated last month
- Reconstruction of focal amplifications with long reads☆23Updated 2 months ago