shimlab / NanoSplicerLinks
☆31Updated 10 months ago
Alternatives and similar repositories for NanoSplicer
Users that are interested in NanoSplicer are comparing it to the libraries listed below
Sorting:
- ☆38Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated 3 weeks ago
- Long-read splice alignment with high accuracy☆63Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- ☆35Updated last year
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 2 months ago
- ☆23Updated 9 months ago
- ☆20Updated 3 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆30Updated 6 months ago
- ☆13Updated 2 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- Long read to rMATS☆32Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Improving gene isoform quantification with miniQuant☆29Updated last week
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated last month
- Scoring GT/AG sites for improving spliced alignment☆46Updated 2 weeks ago
- ☆37Updated 6 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 3 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- Reconstruction of focal amplifications with long reads☆22Updated 2 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated last month
- A tool to detect structural variant☆18Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- ☆51Updated 6 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago