Causal inference, differential expression, and co-expression for scRNA-seq
☆19Dec 19, 2025Updated 3 months ago
Alternatives and similar repositories for normalisr
Users that are interested in normalisr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Updated this week
- Fast Inference of Networks from Directed Regulations☆22Dec 7, 2023Updated 2 years ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆12Apr 13, 2024Updated last year
- ☆12Apr 16, 2021Updated 4 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- Main codes for AD epigenetics paper by Nativio et al.☆11Dec 7, 2019Updated 6 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆35Sep 4, 2025Updated 6 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Apr 13, 2021Updated 4 years ago
- Neural Crest Fate Decisions☆11Jul 9, 2019Updated 6 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆29Dec 22, 2022Updated 3 years ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆16Mar 2, 2026Updated 3 weeks ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Aug 24, 2023Updated 2 years ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated last year
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- Assembles a graph manifold from time series single-cell RNAseq data☆18May 11, 2021Updated 4 years ago
- splicing and feature maps for RBPs☆25Mar 11, 2026Updated last week
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆22Jun 18, 2022Updated 3 years ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆31Updated this week
- Scripts for building computational models of gene regulation with tensorflow☆11Jan 21, 2020Updated 6 years ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆10Oct 27, 2023Updated 2 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- Multiome GRN inference.☆133Apr 19, 2024Updated last year
- Multi-Scale Integrated Cell☆36Aug 11, 2022Updated 3 years ago
- ☆19Updated this week
- R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data☆26Feb 9, 2026Updated last month
- ☆11Sep 17, 2020Updated 5 years ago
- Differential Robust PCA☆13Jul 10, 2022Updated 3 years ago
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆10Apr 6, 2023Updated 2 years ago
- Python module and utility programs for working with GFF files☆33Nov 25, 2020Updated 5 years ago
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Mar 30, 2025Updated 11 months ago
- R package for Flexible dot plots☆29Jun 19, 2022Updated 3 years ago
- List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS☆31Dec 9, 2025Updated 3 months ago
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated last week
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- ☆37Apr 16, 2025Updated 11 months ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated last year