Causal inference, differential expression, and co-expression for scRNA-seq
☆22Jun 11, 2026Updated 4 months ago
Alternatives and similar repositories for normalisr
Users that are interested in normalisr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 3 years ago
- A multi-task neural network for predicting perturbation responses to Alternative Polyadenylation usage levels☆11May 18, 2023Updated 3 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆42Updated this week
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆12Jul 31, 2026Updated 2 months ago
- ☆16Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SCREE (Single-cell CRISPR screen data analysEs and perturbation modEling) is a workflow to perform quality control and analyses of multim…☆11Oct 13, 2022Updated 4 years ago
- Fast Inference of Networks from Directed Regulations☆22Dec 7, 2023Updated 2 years ago
- ☆17Dec 21, 2022Updated 3 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- FlashRNA - An Efficient Model for Regulatory Genomics☆19Oct 15, 2025Updated last year
- ☆19Mar 21, 2024Updated 2 years ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆23Aug 2, 2026Updated 2 months ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆99Jul 31, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Analysis code for the TAP-seq manuscript.☆13Jun 25, 2021Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆37Apr 13, 2021Updated 5 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆16Aug 10, 2026Updated 2 months ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 3 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated 3 months ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 4 years ago
- CHANGE-seq analysis pipeline☆13Sep 14, 2026Updated last month
- Single cell manifold generator (SCMG)☆15Oct 22, 2026Updated last week
- Scripts and notebooks used in Akgol Oksuz et al. paper☆12Jan 18, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data☆31May 4, 2026Updated 5 months ago
- Assembles a graph manifold from time series single-cell RNAseq data☆18May 11, 2021Updated 5 years ago
- HTSlib high-throughput sequencing library as an R package☆11Apr 28, 2026Updated 6 months ago
- HiDeF (Hierarchical community Decoding Framework)☆15Jan 30, 2024Updated 2 years ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago
- Scripts for building computational models of gene regulation with tensorflow☆12Jan 21, 2020Updated 6 years ago
- Awesome GRN enhanced AnnData toolkit☆13Feb 19, 2026Updated 8 months ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆29Dec 22, 2022Updated 3 years ago
- Fast algorithms for GLM-PCA.☆19Mar 12, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- splicing and feature maps for RBPs☆25Oct 4, 2026Updated 3 weeks ago
- Machine learning methods for DNA sequence analysis.☆66Sep 30, 2026Updated last month
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- ☆15Nov 21, 2025Updated 11 months ago
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated 7 months ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆78Jun 10, 2026Updated 4 months ago
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago