Alternatives and similar repositories for normalisr

Users that are interested in normalisr are comparing it to the libraries listed below

• pachterlab / GFCP_2022
  RNA velocity validation
  ☆22Updated 3 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 5 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated 2 weeks ago
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆26Updated last year
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆34Updated 3 years ago
• Katsevich-Lab / sceptre
  An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
  ☆33Updated 2 weeks ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• jacobhepkema / scover
  scover
  ☆23Updated last year
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated last year
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆34Updated 2 months ago
• emiraldi / infTRN_lassoStARS
  Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS
  ☆15Updated 3 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• MarioniLab / geneBasisR
  R package for gene selection using k-NN graphs.
  ☆13Updated 2 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆32Updated 5 months ago
• cellatlas / human
  ☆44Updated 10 months ago
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated last year
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• kostkalab / vaeda
  Vaeda method for computational doublet annotation
  ☆17Updated last year
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆30Updated 2 years ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆37Updated 2 years ago
• satijalab / Mixscale
  ☆19Updated 4 months ago
• theislab / scPoli_reproduce
  Reproducibility notebooks for scPoli
  ☆19Updated 2 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆21Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 8 months ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆19Updated 7 months ago
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆25Updated last week