parallel differential expression for single-cell perturbation sequencing
☆29Aug 26, 2026Updated this week
Alternatives and similar repositories for pdex
Users that are interested in pdex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Jan 30, 2026Updated 7 months ago
- Comprehensive suite for evaluating perturbation prediction models☆155Jul 27, 2026Updated last month
- A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries☆48Updated this week
- High-Performance Sparse Matrix Library☆19Nov 23, 2025Updated 9 months ago
- Bayesian Sparse Additive Perturbation Regression, code and simulations☆16Apr 29, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Single-cell Analysis of Perturbational Effects using Machine Learning☆20Oct 9, 2025Updated 10 months ago
- pytorch dataloaders for single-cell perturbation data☆51Jul 18, 2026Updated last month
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated last month
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated 3 weeks ago
- ☆31Jul 27, 2026Updated last month
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆16Updated this week
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆68Updated this week
- ☆18Apr 23, 2026Updated 4 months ago
- a dataloader to work with large single cell datasets from lamindb☆41Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆21Updated this week
- python implementation of the PAGE algorithm☆24Feb 15, 2026Updated 6 months ago
- A high efficiency binary format for sequencing data☆105Updated this week
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆154Apr 28, 2026Updated 4 months ago
- Image-based Profiling Handbook☆11Apr 15, 2025Updated last year
- Robust and efficient analysis of single-cell perturbation studies☆15Aug 12, 2026Updated 2 weeks ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆36Jun 3, 2026Updated 2 months ago
- ☆20Updated this week
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆36Jul 24, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆77Aug 16, 2026Updated 2 weeks ago
- Fairness in single-cell data☆21Mar 25, 2026Updated 5 months ago
- Read and Write RDS files, in Python☆29Updated this week
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking☆32Aug 15, 2026Updated 2 weeks ago
- ☆26Jul 22, 2026Updated last month
- A fast, simple, multi-threaded string interning library.☆18Jul 11, 2025Updated last year
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- ☆71Jan 14, 2026Updated 7 months ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆38Mar 1, 2026Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆42Jun 7, 2026Updated 2 months ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆41Jan 10, 2026Updated 7 months ago
- Benchmarking pipeline for single-cell perturbation prediction tools☆36Jul 11, 2025Updated last year
- Single-cell perturbation analysis☆337Updated this week
- Illico is a python library performing fast and lightweight CPU-based wilcoxon rank-sum tests for single-cell RNASeq.☆21Jul 30, 2026Updated last month
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆651Jul 24, 2026Updated last month
- Framework for sensitive DE testing (using neighbourhoods)☆79Nov 11, 2025Updated 9 months ago