parallel differential expression for single-cell perturbation sequencing
☆25Jul 14, 2026Updated this week
Alternatives and similar repositories for pdex
Users that are interested in pdex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Jan 30, 2026Updated 5 months ago
- Comprehensive suite for evaluating perturbation prediction models☆146Updated this week
- A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries☆46Jul 8, 2026Updated last week
- High-Performance Sparse Matrix Library☆19Nov 23, 2025Updated 7 months ago
- Bayesian Sparse Additive Perturbation Regression, code and simulations☆16Apr 29, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single-cell Analysis of Perturbational Effects using Machine Learning☆19Oct 9, 2025Updated 9 months ago
- pytorch dataloaders for single-cell perturbation data☆47Updated this week
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 2 weeks ago
- Configure Vitessce using existing Scverse plotting APIs☆25Updated this week
- ☆28Updated this week
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆16Updated this week
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆67Jul 14, 2026Updated last week
- ☆18Apr 23, 2026Updated 2 months ago
- ☆21Jul 10, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A high efficiency binary format for sequencing data☆103Updated this week
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆141Apr 28, 2026Updated 2 months ago
- Image-based Profiling Handbook☆11Apr 15, 2025Updated last year
- Robust and efficient analysis of single-cell perturbation studies☆15Mar 18, 2026Updated 4 months ago
- Fairness in single-cell data☆21Mar 25, 2026Updated 3 months ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆33Jun 3, 2026Updated last month
- ☆19Jun 3, 2026Updated last month
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆64Jul 13, 2026Updated last week
- ☆24Jul 7, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking☆32Jun 29, 2026Updated 3 weeks ago
- A fast, simple, multi-threaded string interning library.☆18Jul 11, 2025Updated last year
- Benchmarking pipeline for single-cell perturbation prediction tools☆34Jul 11, 2025Updated last year
- ☆69Jan 14, 2026Updated 6 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Jul 13, 2026Updated last week
- a dataloader to work with large single cell datasets from lamindb☆41May 20, 2026Updated 2 months ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆36Mar 1, 2026Updated 4 months ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆41Jan 10, 2026Updated 6 months ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆41Jun 7, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Illico is a python library performing fast and lightweight wilcoxon rank-sum tests for single-cell RNASeq.☆20Jul 7, 2026Updated last week
- Single-cell perturbation analysis☆338Updated this week
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 8 months ago
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆33Jul 9, 2025Updated last year
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆621Updated this week
- Official Implementation of the paper "Variational Control for Guidance in Diffusion Models" accepted at ICML'25☆20Dec 5, 2025Updated 7 months ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Oct 25, 2021Updated 4 years ago