nanoporetech / ont_h5_validatorLinks
☆12Updated 7 years ago
Alternatives and similar repositories for ont_h5_validator
Users that are interested in ont_h5_validator are comparing it to the libraries listed below
Sorting:
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- Specifications for PacBio® native file formats☆31Updated 11 months ago
- TIDDIT - structural variant calling☆77Updated 7 months ago
- lobSTR: a short tandem repeat profiler for next generation sequencing data☆53Updated 2 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 5 years ago
- ☆49Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- A Strategy for Building and Using a Human Reference Pangenome☆71Updated 5 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆71Updated 3 weeks ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆59Updated this week
- Structural variant (SV) analysis tools☆39Updated last year
- Structural variant merging tool☆55Updated last year
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- ☆27Updated 8 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆38Updated last year
- 10x Genomics Reads Simulator☆46Updated last year
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆47Updated 11 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆80Updated 7 months ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆37Updated 5 years ago
- Human reference genome analysis sets☆56Updated 2 years ago