Alternatives and similar repositories for isoCirc

Users that are interested in isoCirc are comparing it to the libraries listed below

• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• zhailab / polyAcaller
  ☆10Updated 5 years ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆19Updated 2 years ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• Xinglab / rMATS-long
  ☆34Updated 3 weeks ago
• tgen / bisbee
  alternative splicing analysis pipeline
  ☆20Updated 4 years ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated 2 years ago
• a2iEditing / deNovo-Detect
  ☆13Updated 3 years ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆20Updated 3 years ago
• ZhaiLab-SUSTech / FLEPSeq
  The analysis pipeline for FLEP-seq
  ☆15Updated 2 years ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 8 months ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆31Updated 2 years ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated 2 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆25Updated 3 months ago
• TomSkelly / MatchAnnot
  Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
  ☆23Updated 10 years ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆36Updated last year
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆41Updated this week
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated 2 years ago
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆21Updated 8 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆39Updated last month
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated last year
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 6 years ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• nf-core / omicsgenetraitassociation
  A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis
  ☆11Updated last year
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆15Updated last year
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆28Updated 2 years ago
• dieterich-lab / single-cell-nanopore
  Workflow for Nanopore Sequencing of 10x single cell libraries
  ☆19Updated 8 months ago
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆17Updated 3 years ago