Alternatives and similar repositories for grangers

Users that are interested in grangers are comparing it to the libraries listed below

• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆39Updated 2 years ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆53Updated 2 months ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆21Updated 4 years ago
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆29Updated 5 years ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆53Updated last month
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• csoneson / alevinQC
  Create QC and summary reports for Alevin output
  ☆31Updated 2 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆37Updated last week
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆29Updated 4 years ago
• songlab-cal / scquint
  ☆18Updated last year
• pachterlab / sircel
  Identify cell barcodes from single-cell genomics sequencing experiments
  ☆43Updated 3 years ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated 9 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆49Updated 6 months ago
• databio / GenomicDistributions
  Calculate and plot distributions of genomic ranges
  ☆26Updated 4 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated 3 weeks ago
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated 5 months ago
• COMBINE-lab / minnow
  ☆12Updated 3 years ago
• BUStools / BUS-format
  BUS format specification
  ☆14Updated 5 years ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆101Updated 3 months ago
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆58Updated 4 months ago
• sagc-bioinformatics / mgikit
  mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
  ☆16Updated 2 weeks ago
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆31Updated last year
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆25Updated this week
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated last year
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆26Updated 3 months ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year