NatPRoach / c_elegans_dRNAseq_analysisLinks
Scripts used in the analysis of C elegans dRNAseq data
☆14Updated last year
Alternatives and similar repositories for c_elegans_dRNAseq_analysis
Users that are interested in c_elegans_dRNAseq_analysis are comparing it to the libraries listed below
Sorting:
- Two pass alignment for long reads☆22Updated 4 years ago
- ☆21Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- Long read to rMATS☆31Updated 2 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- alternative splicing analysis pipeline☆19Updated 4 years ago
- ☆23Updated 4 years ago
- isoCirc☆10Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated last week
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- Pipeline for calling poly(A) tail lengths from nanopore direct RNA data using nanopolish☆10Updated 4 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 3 months ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆18Updated 2 months ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 8 years ago
- ☆19Updated 2 years ago
- ☆28Updated 5 months ago
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Updated 2 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- ☆20Updated 7 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- A pipeline creation tool using Snakemake☆11Updated last week
- A script to make downloading of SRA/GEO data easier☆30Updated last year
- ☆12Updated 2 years ago
- ☆36Updated 2 years ago